Protein Info for mRNA_1901 in Rhodosporidium toruloides IFO0880

Name: 10269
Annotation: HMMPfam-Spo7-like protein-PF03907

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 48 to 70 (23 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details PF03907: Spo7" amino acids 21 to 284 (264 residues), 138.2 bits, see alignment E=1.6e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>mRNA_1901 HMMPfam-Spo7-like protein-PF03907 (Rhodosporidium toruloides IFO0880)
MSPALVSRRARTFHPPATRESFKDLLIFEERLKQNAERLQKQRRKYEAFLFSLVAVIVYL
GYGVFVLPSIYSLVHYSNIAMLLVAVTTLVLFFATGMYSEKIAYAHKFVPQANRALRPFN
IYLNTRHRSRFSLFRLFKSSPSPALSRTPSGRSLTPSSALSSPPLSRRTSASSAASSTDT
VRSTGAFRSPPPSPPLAANASPPPSPSRRTLPLPETIDDGPVTRAPPSPPPSSSPRSGVP
IPPIPPAQNLRGELIFSSRVNPQFREGYERYRAEWERRRAEAKRVQREAQGKAGWMGWMM
PWRRRGARPPGSAEPAKEKTVEEKREGAGKAPPSLPKFEQGGDADSFGGSFPPTRSSSPD
PHGEHTSTVLSSTSTPASSLSRSSSPSRLAAEGGRSSPVRIRAESFSELLTHSLDEEGEG
AKGRTQFTRGPGLERSGSMRASGG