Protein Info for mRNA_1903 in Rhodosporidium toruloides IFO0880

Name: 10271
Annotation: HMMPfam-Sfi1 spindle body protein-PF08457

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1144 PF08457: Sfi1" amino acids 590 to 728 (139 residues), 34.8 bits, see alignment E=3.8e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1144 amino acids)

>mRNA_1903 HMMPfam-Sfi1 spindle body protein-PF08457 (Rhodosporidium toruloides IFO0880)
MAPHPGDDSQTQSSTLEPFPPLSSSQRNLINHTLALLAHDAHTWADLTHAQGVLQRDGHA
SADEIARLYEVWLRMVWVEGTTWHDKWDAVQRQWAEAEGVNGTNAATPVANRRNHRRRPS
DNLDLLRRKLDAVELDTPQQPSSAPRPLPPRTRPKSTPPRQLLVRPAQQAGGYSSSDDQF
VGVPTPPTARATRLALPPRTERVPLSTTDDDAPGQTTRRRRLSSTTPHQVLTSTPRPSAR
PPSPPSPEPTPLHSRSDAHPLLNRRLSALRPRSPSPSPSPRPPSSSSSMLISSALSPPEA
LSLALSFDRLRLLMPLFAHWSARVRFVREREGELGRRREGWLRRCGWEQWVGRFKRIREG
REKAEEWRNERDERRLSKAGRRRALGGAFAMWREKWITRVETRQAAEREEARREKEAALR
EARDAVLSLRYRGLAVRSLREWRIRCATKRVEKVVGAGLARRAVEKWVRRVGEVKHRAEV
MEEIADEKWAESEEGRKREKWGWWVRRTALRVKEAELVGAKEDALRREGWEWWREMKQRR
DHVCHLEQVASAHDARHLALQSLSTWRNRTARLAFLSSLASTHAHTLLTRRASSQLTHWR
LSLRLRLALRIRADSLLSTSLSHWLDAYEHVQIELEGRADALIATRDARVGGVALEVWRS
AVAHRRKLQRAAETYARLRSVARGLEKWKRRWEEERVREKKAEVVRDFFVTRRAWRRSTG
GGNGRRRRSTTGSFSYGNDDETASSSRSYSASKLSAFSPLQWSSGSLLSSCAGRKRSKRE
TGGITSSSAMASDDGHSRRSRRKNGSCARPRSEPSSSKNSATAFFTPGCPHLDAPPRYAN
GSSASTPRDEARRSKLPSTAGANALSNAPKSRSSDAELSGKDKRHGSDGRAGQRPLRRSS
TTIAFSPRMLFRLGKHGRRPQTLRGGLSRRTRALSSAEPFRSGRSRRARRRLCGRTAVAC
VSDLHQLPPHLRSPRQFAPLRLELPQIPHRHSPARLPVPLGPHRLRLHRRLRRAIVPRLR
LTRGLSALRHLPHPPSPSARRHLRRLPLHPQHLAAASQPRSPSTSHPRRDNPTRRSENDD
VRSSAFLARAQHRRVVRRCLRVACRASTTIRTRKTRRVLAGKASRPGARAARTCEDGTRL
CGLG