Protein Info for mRNA_1909 in Rhodosporidium toruloides IFO0880

Name: 10277
Annotation: K01426 E3.5.1.4, amiE amidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 PF01425: Amidase" amino acids 92 to 527 (436 residues), 320 bits, see alignment E=1.4e-99

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>mRNA_1909 K01426 E3.5.1.4, amiE amidase (Rhodosporidium toruloides IFO0880)
MARAAKAYHQTLPHLTKDNWREHAAAKREQRDALIPTEWHLSPDALAAAGDNVTGVPASC
GILSGKELEITELDEVEELAKRIADKTYTAVEVATAFSKRAAIAQQLTNCLTEIFFKKAL
ERAKELDEILEKTGKTVGPLHGVPVSLKDQFDIAGTELTMGYVSYLGRISPRDSAIVALL
RDAGAVFYCRTNVPQTLMIGDTNNHLFGRTHNPHNRKLSPGGSSGGEGALIAMKGSIIGV
GTDIGGSVRIPSAMCGLHTIRPTTRRVPYGHATNSLLGQESVLSVAGPMARSLSSCTYFL
RTLFNFNPQKRGKLAFGIIRTDHNVTPTPPIKRALETAAKKLVDAGHEVIEFDSTLIKDA
FELSNDFFAADGGEDFKRTLGTIEEPLIPGLSPTPEGLKTVWELWQLNRAKEEMQQAFLA
QWLATAGQTSTGRPIDGLLCPPGPVTAVLPGNNRHAGYTGMFNLLDVPALCFPVTKVDPA
VDLPDSNFKALDEEDQRFHDEYDAQLTAGVPAGVQLIGRRWQDEELLGLGEVVSDIVGSK
HWAA