Protein Info for mRNA_1910 in Rhodosporidium toruloides IFO0880

Name: 10278
Annotation: HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 52 to 75 (24 residues), see Phobius details amino acids 83 to 100 (18 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 283 to 300 (18 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 352 to 368 (17 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 456 to 474 (19 residues), see Phobius details PF10348: DUF2427" amino acids 40 to 137 (98 residues), 82.2 bits, see alignment E=2.3e-27 PF10355: Ytp1" amino acids 163 to 405 (243 residues), 187.4 bits, see alignment E=3.3e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>mRNA_1910 HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355 (Rhodosporidium toruloides IFO0880)
MATSMVGGRLGCVVATLLFISFILGVAAHEHHEVETGPYEQNFTNDEDLDSVIKWHIAIQ
IFCWGLLFPAGMVLGITRSRFHVPLQSLGIVLTLSGNFLGHHHAGRSFHMTAHAYFAGYL
WWYLILQTVMGVFLKLHVMEGTALRRGVVTAHGIVGKSFPIAGWVQMLFGGIAASGFCFG
EHFTQCLAHFIMGSAFIAYAMILLLMLRVGAGFLARNKLSQEYLDSWVIMLWGIVNTFTE
HNFLSAHPTGWSHKDLQHTSLGVLWWAGGALGIWLGRKQRRNIVPALIIGMTGYAMANHG
QHLQFSEDVHKFFGYALVFAALARIIEVCFVLRDAPTPAPSETEGPRSFQHLTPFLLVLS
GLTFLSATEEQMQWVAGSGMDSTTYSIILVSGSFAIYLVGVSIVDLYEHQIRLKSTAQAV
GIAHADADVEGSGGGIALDSSPNLRSPSPGARNLRVLGMAVPGVVAGVVGKVMHVLQSLE
ERDGGSRGTGARDAGAMGHARRATVEYESLPLTAGRDSVDARQDDGVEMQQRNGVGAGRG
TGRTAGGGSAGSDETVFELGDYEDDGGDGYWAEKDEDGRGGRPAVRA