Protein Info for mRNA_1919 in Rhodosporidium toruloides IFO0880

Name: 10287
Annotation: K11340 ACTL6A, INO80K actin-like protein 6A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 PF00022: Actin" amino acids 9 to 440 (432 residues), 417.8 bits, see alignment E=1.9e-129

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>mRNA_1919 K11340 ACTL6A, INO80K actin-like protein 6A (Rhodosporidium toruloides IFO0880)
MSPPVQYGGDEVGALVLDIGSSTVRAGYAGEDAPKCLFPTAFATVPSSDPSQPPTYVHGN
NVHLYRPHATVSSFVTDQIVTDWDAAGRALEHAFQDRMRVKTLEEFPLMATEPSWNTKEN
KEKMCELAFETWQTPAFYSVDKAVMSAFAAGKGSALIVNVGEELTTVTPVYDGFVLRKAI
QKQPTGGALLSEVLLSSLKSQNLPVTPHYLVKTKEAVEPNQPANAQLREDRLPNPSNPNA
ATTPSYHRLEEMRLMHELKESACEVMTPSWDDNSVNQKASRAFEFPDGFNTYLGTVRLST
PEIIFNPQRFLPAEFKNRQLPPSASTIPSHPYSALQPLAGLIRNTLVQVDPDLQATLLAN
VVVTGGTTLIPGFVDRLQAELGIVAPGMKIKIHAAASAAERTHSSWLGGSILASLGTFHQ
LWIGKDEYQEVGKSVVHRRAK