Protein Info for mRNA_1927 in Rhodosporidium toruloides IFO0880

Name: 10295
Annotation: K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1282 PF00672: HAMP" amino acids 247 to 285 (39 residues), 16.4 bits, see alignment (E = 2e-06) amino acids 330 to 381 (52 residues), 26 bits, see alignment (E = 2e-09) amino acids 424 to 474 (51 residues), 27.9 bits, see alignment (E = 4.9e-10) amino acids 516 to 565 (50 residues), 27.6 bits, see alignment (E = 6.2e-10) amino acids 611 to 656 (46 residues), 33.6 bits, see alignment (E = 8.3e-12) PF00512: HisKA" amino acids 768 to 833 (66 residues), 55.8 bits, see alignment 7.8e-19 PF02518: HATPase_c" amino acids 880 to 995 (116 residues), 105.2 bits, see alignment E=5.8e-34 PF00072: Response_reg" amino acids 1146 to 1260 (115 residues), 80.5 bits, see alignment E=2.1e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1282 amino acids)

>mRNA_1927 K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1 (Rhodosporidium toruloides IFO0880)
MPTSPVPFAEDPAFDSSRPPLTHLTSGSSTSSAALSTPATSISALSWPSPPCEPSLSTRS
PFFAAPDTDSAPPTATTTPSLDASPPAMDSMSEPLASSTPVHTFPTFVLSLLTALESDPA
SVRHHLDNLAQSHAAPANFLPTPMGKPGETDAIVASLSRIAARLRAAEEPVSGAKSRDAE
QDQTDPNGRVEAAAAGCAPPKMSTRRPFVPGESVEEVRKNCEDQIQALKVLHAEELHRAQ
LSHDNEVRSIAVVTSAIARGDLTKTIDAEVEGEMAVLKTTLNEMVYKLRLFSSEVTRVAL
DVGTRGKLGGQAVVTGVEGTWRTLTETVNLLASQLTVQIRSIAIVTSAIASGDLSKTIDA
EVQGEMLDLKSTVNGMVQRLRVFAAEVTRVAKEVGTDGQLGGQAIVHGVEGTWRELTFSV
NSMAANLTLQVREIASVTKAVANGDLSKTVNIEASGEIQELKMTVNSMVAQLRRFAAGVT
RVALEVGTEGQLGGTANVEGVQGEWSSLVASVNQMASNLTQQVRSIAAVTTAVAEGDLSK
KIDVEVKGEMLDLKLTVNSMVDSLRLFAAEVTRVAKEVGTDGQLGGQAYVSNVSGEWKSL
VDTVNVMCGNLTDQVRSIAKATTAVARGDLSQKVTIEANGEVLQLVVTINEMVDRLATFA
SEVTRVAHEVGTKGNLGVTAKVDNIEGTWQEITNNVNTMALNLTSQVRAFAQISAAATEG
DFSSFVTVEASGEMDSLKSKINKMVFSLRDSLQKNTAAREAAELANRSKSEFLANMSHEI
RTPMNGIIGLTGVTLETDLTRQQRENLMIVSNLANSLLLIIDDILDISKIEAGRMTVEQI
PFSVRSAVFGILKTLAVKATQSRLDLMYSVESDIPDLLVGDPFRLRQVITNLVGNAIKFT
QRGQVALSCRLGAADLEEKTYQLEFCISDTGIGIKPDKLNLIFDTFAQADGSTTRKYGGT
GLGLTISKRLVQLMGGELWVTSQFGRGSQFYFTIQCRIGEWNLDQVRQKTLIPHPGRRIL
FIDTLHHDPSVIESVEQLGLEITVVDTLEEACLLDHSQTGYFDTVLVDQLSVVERIRDVE
HLRYIPLVLVTPQIPQLNLKYCLDFGIANCVESPTNAQDMCNALLPALEASNRIPSERGG
DASFKVLLAEDNIVNQKVALKFLESAGHQTEVVENGALALEAVKKNFYDVVLMDLSMPIM
GGHEATQIIRKFERENGLERLPIVALTAHAMLGDREKCIEVGMDEYLTKPLRKPDLLATI
NKVVLQRRAGPSPATSIFLTHP