Protein Info for mRNA_1930 in Rhodosporidium toruloides IFO0880

Name: 10298
Annotation: KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1275 transmembrane" amino acids 203 to 223 (21 residues), see Phobius details amino acids 404 to 422 (19 residues), see Phobius details PF07500: TFIIS_M" amino acids 537 to 662 (126 residues), 63.3 bits, see alignment E=2.8e-21 PF07744: SPOC" amino acids 885 to 1052 (168 residues), 36.8 bits, see alignment E=3.8e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1275 amino acids)

>mRNA_1930 KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains (Rhodosporidium toruloides IFO0880)
MVGGRQRKPTARALDAAESRLLVASLSRERPRAVGGRPASPATPAPRASTSTTKTTYSAA
AAPVKKNGRAQNARGKQAIERETGIAQEQVDEEVADGTSEGSAGLGPYGGQQDLTLYCVC
LGYDTGEQPMIQCEHCSNWSSTSPSAAAPACLVFRSLAALRFHFGCVGLTDQVASQIEAY
SCDMCEQMGMGSSRSESLVSRPSLLSTVSFCATSGMFPVSVSLRARPRGRRTGTQDRMPA
CAAALARQDPPRSRRRSYYCTPSLHYHGPRQARLQSHRIAPSPQALPIARRAPPVSHPVA
KGRCPPLVDACDTTGRDFEEQRASLCLAFDGRRGRCGGGGRAGCEAGGCVVCSSCSSARR
RFWRRVRRMGSCGRSEGATRGSRDERSRGGARVEQLSRQSEQLADLFLLLAVLTGSSTRI
APVTTFYSRRGDDGGQYDDEDEPFEDEEEDEGEPEPEDDEDFEEDGSKKRSRKSTGGKGM
RRKRESVEESSDDYDSDEDDEAPKKRRRPSAPTKRGTGSQLDVKPSLPPPTSVPPSDKTR
SHVVKQLTSIFSSIYAADATASDSSNSTGIEIRSAAFAEEVEGELFEGYAEPDDKNVRGP
RAKYSAKFRSLHYNLKSNAYLRSRVAANELTANKLVNLTAEDLQTPELRAMAESVRAASL
RNSVKEVLAAPTAKRTHKGEEEIESEAKLILEAEEAQKNREEAQKEADRQRSNSVAADSP
GPFAGSPAAAGSPVPQSPGNRDSPSFFPTTTPRHRSSLVPGDASPLEKQGSPALPAGSPK
LDELENDMSPPPAPNKPRGSTSSFDMSSIWGKVKAASPTPTEEPKDADAAGAEGKEEDEA
KEEKDEGEEAGAPIDEDFEDDLFRDPDASPKKRAPAPPPAPALADLPPVWAGDLIVPEEG
GFPAFALQVGGRPVGSSLETWTKLLPRGLTTAGRLPTAKATKYLIECALAPTRELIIAAL
MPDMTGPSADFPHKPTKDSCVAKHQHIVDTYVKRDRVGVVQPPKELLKLVKDIYIVPLRR
DASVPEYVELTDEHCLPEKRKRSEDLVLAVLVVQKGALPTVKPQPIAAPAPPPVVSAPPP
AFAPPPSAAPPGGSPVPPQHGVHGFSPPPPGFSPPYQAQPYQSPPPPPAQPADAGFDPAV
MQSLLSQVDPNTINNLLANPSLLNNLAGFGGAPAPQQPPPPPMYQGYAPPHSAMQGYAPP
PPAGYGYPPPPPSGPAGGGGPPVHPSRLAMMSNAPPPDVQYGQQHGGASPGGYAPPGAPR
DQGWGARRGGGGYGY