Protein Info for mRNA_1941 in Rhodosporidium toruloides IFO0880

Name: 10309
Annotation: KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 PF12706: Lactamase_B_2" amino acids 171 to 340 (170 residues), 56.6 bits, see alignment E=2.7e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (768 amino acids)

>mRNA_1941 KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily) (Rhodosporidium toruloides IFO0880)
MILSEQPDQDDLSSSSDRPAHHVVHPITGTLTFRNPWPSASAPSATELLFGGAWLGWPKL
HLDKHPKARELQVLDPEDWGRKKVKELKREAEGQGKGNKVGFARGTWLGHAAVYVQLPLD
VPTDPLSALRRKSEKGEADEEKIRRGRNEKVEGAVDEEDQYAEDEETTLKLLFDPIFSER
AGPTSYTGPGRLRPTPCKVEDLPGVDAVLISHNHYDHLDLNSVKSVLEKWPRVKFFVPLG
NKQWFYASGVPLSQIYECDWWDDVDLTPSDFGLVPPSLNYTSAPSSNNGDPQSGRTSRSM
SMSVPREKERIRVTCVPAQHNSGRSPADQGSTLWCGWVVEHLLESDAPNPPFLDNNSKNA
SSVTMSTESFVSAPDPDEVEPFMGAGATLVEEPEEEDVANFAVDETSDGEDMPVPNGQKP
RVQLVPPSDPNSPALTPVTSPASASVASESTDASTSSTSLSALQTSTRRDISPSRRGSMT
QLLQRSSSFSQTLRRRLSSASRSDGTERPPSRTASFSAPPLARSSSLRIARDRQREREAA
STSTSGASTPGDSEDGSGQSPLPAAPAAEKTAEGEEEERRVKAEEKAREVAAKAERAEKE
AGRAVHEGRWTKRILRKGAVYHAGDTGYRRHRRAAHPVCPAFDEIGLKYGPFDLAFVPIW
RGGSLGFVSAIGLRLHHENISSAVHGSPADAVDIHLDVRSRNTIGMHFGTFIGSETESLE
AIIELHEAVEEAGVKALDDPNEDELGRMGVIDVGETWCVEIHNLLIVS