Protein Info for mRNA_1942 in Rhodosporidium toruloides IFO0880

Name: 10310
Annotation: HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 PF13091: PLDc_2" amino acids 698 to 846 (149 residues), 40.8 bits, see alignment E=1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (893 amino acids)

>mRNA_1942 HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024 (Rhodosporidium toruloides IFO0880)
MSADPATMPKQGEEAAPAPASFPPTRAPPERRGSVDVLAAMAKPPPFPPLDLMHDRTRTV
SHAMAQSKRADEQRRRDKGKAKAEEEPLDEVGVSEGRRWKAGLKPGQAAKKLFPKPNLAR
RAYRRFFIKRDLKYGRAWRPEELEEAARRGNFPHRPSDLFLKMYSDVLTCLTRDPLAGNV
SPALIGTQGTIPLSIVSTIPDIMQHYQDCIVLAEKEVFLVTNYWQPSDSVNTVASGLKEL
NKRVGERKGEKVVVKIMWDRGAVQQLWHNHVSVTPQTWTPLGLPHPDEVPNLSLQVVNFH
RPLLGTFHQKAMVVDRKIALLNSNNIQDRPNLEMMVHLEGSVVDSIYDNMLISWHESLSP
ALPCLTGPTPTTHPDLFPFTFTDSNPYLANIDVAKAARAARKLLNRQDDQARKGEQMESL
NPPEWWRRTSTSGPNPWPFGTFMHGHAHAHGHGHPHGMPRQDSAADGAEGGKFAALVMQL
VEKAREEKARLALGMQGMMNQGQDGQAVAAGSSGAAVSTAVEAPRESVAGDAASNGSSDG
SHTRVNGVSGKTAVGGEAEKPDLSVKTEPRNGASAEPDPPGFNHSEDPSPTAAAAPQEPP
ANIGKDMEPTSPASPNGDSNKGTASSARLAALSKALNAGALAKIDAAIDDETLIHDFKPH
LLHKEHKPFPIALVNRRPHGSPGHNDIRCPQAAAWLAALKFAERDVFIQTPTLNAAPIVR
GVIEACSRGGKDGKGIPVTLFLGLGFNDKGESIPFQGGTNEEVVFRLFGQLRKLGKENNL
HVYWYTGKDQIRPLNAVHKSRNCHIKFMSVDGQCAIVGNGNLDSQSFWHSQEANILIDNP
QIVADWMDQLRTNQSTHKYGRVDTDGIWRDPSTGEELEKPKSISCFTAMRAVI