Protein Info for mRNA_1949 in Rhodosporidium toruloides IFO0880

Name: 10317
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 336 to 354 (19 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 387 to 414 (28 residues), see Phobius details amino acids 434 to 446 (13 residues), see Phobius details amino acids 495 to 518 (24 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 439 (402 residues), 142.7 bits, see alignment E=2.2e-45 PF06609: TRI12" amino acids 58 to 320 (263 residues), 34.4 bits, see alignment E=1.4e-12 PF00083: Sugar_tr" amino acids 68 to 204 (137 residues), 37.3 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: None (inferred from 50% identity to scm:SCHCODRAFT_48149)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>mRNA_1949 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MAPSDDERSPLLQSRPSEEPEDPTKLPKGRRNAILVAVWLGVFLGALDGTIVATLISDVS
SSFKKSNQAGLLGTSYLLSTATFTPLYGRLADIIGRRAALLIALALFTSGTALCGFAPSM
VSLLIGRLIAGMGGGGLMAVSSIVASDLIPLKQRALFQGLANLFFGAGSGLGGPLGGFIS
DRYGWRTAFIGQLPVLLLATFLVFRNLRYRIPGQGKSKREMARRIDYLGSLTLVISLGSL
LFALSFKNDRSLPWSSPFVWAPLIAFVVATIAFVLVEAYYSPEPVMPLRLLKDRNGLFVA
LANFTVSFVSFSILYFYPQFFEIVKQKSASEAGAHLLPNSIALSAGSLFAGFVIRKTGRY
YWLIAITSAFPIFALTSFVFLDEKSGWFLSWLSILPSGFGFASVITAGLIALIASVDRSD
MATATGLTYLFRYVGQVVGVACSASMLQAVLTSELKHRITGPGAAKTIDQIRHVATSIPS
LPPAIQQAARDSYRYALRAVFLLNLGVAVACFLTTLPIREYPLPGSFEEEEQHRRQRNSG
TSTPSGAAQA