Protein Info for mRNA_1952 in Rhodosporidium toruloides IFO0880

Name: 10320
Annotation: K14564 NOP56 nucleolar protein 56

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF08156: NOP5NT" amino acids 4 to 69 (66 residues), 66.2 bits, see alignment E=2.9e-22 PF01798: Nop" amino acids 172 to 404 (233 residues), 297.6 bits, see alignment E=6.1e-93

Best Hits

Swiss-Prot: 61% identical to NOP56_SCHPO: Nucleolar protein 56 (nop56) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K14564, nucleolar protein 56 (inferred from 62% identity to cci:CC1G_07999)

Predicted SEED Role

"Ferredoxin" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>mRNA_1952 K14564 NOP56 nucleolar protein 56 (Rhodosporidium toruloides IFO0880)
MATHLLFESATGLSLFTSEFAEEIGKSAKSVQDSIDDLSKFGKMVKLVSFVPFTDAAHAL
EVANDVSEGVVHEFLQGLLELNLGKKAGVVLGVEERGLASSIKGTLGIECDASDRTLEVL
RGIRLHQEKLLAGLESGDTKRSQLGLGHAYSRAKVKFNVNRSDNMIIQAIALLDQLDKDV
NTFAMRVREWYGWHFPELVKIVPDNYQYAKVCHLIGDKAQITDETVEPLTELLDNNETLA
RNIVDAARASMGTDISEVDHLNIKNFATRVIHLYDYRKSLQTYLSEKMSVVAPNLAALIG
DTVGARLISHAGSLTNLSKYPASTVQILGAEKALFRALKTKGNTPKYGLIYHSTFIGRAQ
AKNKGRISRFLANKASIASRVDCFSDFPSTKIGEALRDQVEERLAFYDTGSNPTKNADVM
KKALEAAKAEAAEHVGADAMDVDEAPAKEDKKEKKKKRKSEAAVEEVAAEEESPKKKKSK
KAKDDGEKLSKEEKKALKKAKKEAKASKA