Protein Info for mRNA_1957 in Rhodosporidium toruloides IFO0880

Name: 10325
Annotation: K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF01015: Ribosomal_S3Ae" amino acids 16 to 221 (206 residues), 307.2 bits, see alignment E=2.5e-96

Best Hits

Swiss-Prot: 81% identical to RS3A_LENED: 40S ribosomal protein S1 (RPS1) from Lentinula edodes

KEGG orthology group: K02984, small subunit ribosomal protein S3Ae (inferred from 80% identity to cci:CC1G_00238)

Predicted SEED Role

"SSU ribosomal protein S3Ae" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>mRNA_1957 K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae (Rhodosporidium toruloides IFO0880)
MAVGKNKRLSKGKKGIKKRVVDPFTRKDWYDLKAPSMFDTRNVGKTLVNRSSGLKNANDS
LKGRIFELSLGDLNKDDENTFRKIRLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTL
IEAQLDVKTTDGYLVRLFTIGFTKRRPNQVKKTTYAQSAQIREIRRKMFDIMQREASSCD
LKQLVQKLIPEVIGREIEKASQSIYPLQNCYVRKVKIMKQPKFDVGKLLELHSSSTEEEV
GQKVVREFKEPEVLASV