Protein Info for mRNA_1973 in Rhodosporidium toruloides IFO0880

Name: 10341
Annotation: KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 952 PF18086: PPIP5K2_N" amino acids 18 to 107 (90 residues), 127.3 bits, see alignment E=3.1e-41 PF08443: RimK" amino acids 223 to 323 (101 residues), 33 bits, see alignment E=7.1e-12 PF00328: His_Phos_2" amino acids 369 to 851 (483 residues), 288.8 bits, see alignment E=1.3e-89

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (952 amino acids)

>mRNA_1973 KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton (Rhodosporidium toruloides IFO0880)
MSSTPGSTEPSTPTEPLMRLGVAAMDRKARSRPMRNILSRLLATGKFEITVFGDKVILDE
DIENWPVCDFLISFYSDGFPIDKAIAYVELRKPVCVNDLPLQKIFWDRRVVLQILDKIGV
PTPKRLECNRDGGPQLDKSIADQIQQSLGIRVDKPRPTSEFALLDDDTIEVDGNTMLKPF
VEKPVSGENHNINIYFPKRKGGGARRLFRKVGNQSSALEPNMTMPRTDASYIYEQFVDVE
NAEDIKVYTLGPNFVHAETRKSPVVDGIVRRNTEGKEIRFICQLTDAEKKIARDISIAFK
QNICGFDMLRANGKSYVIDVNGWSFVKGNDFYYDKCAEILTNFCLRKMPSLPKPVSDNTD
KRREKSWTLKSTICVARHGDRTPKCKLKFKFKGKDEWTAPLMGLLQGRSTEIILRDPVQL
QYIADAAEQAILIPGADLEQLEQLRKIIEKKKNTIGTKAQLKPSFKEEVCETLAVVVKWG
GEFTHAARYQARDLAENMRKDYTIMNKTLLEHTNVYTSSERRVVATAEIFTTAFLDERER
PTGEQQTHQLIIRKDLLDDSNAAKEEMEKVKKKLKTLCRPGLHVRPEFAWPAKEKDPFEV
RENRRVSPLSRYLTSLTAQVVKETIELMKSLRETMNENWHSLAVENIQPRWCCGEYPYLF
RERWEGLFADWCDVSLEKFDPSRVSELYDSLKYDALHNRVFLETIFTKNGSRPSSIDSRS
ALEATSSDNGPPRQLRELYKRAKLLFDLIAPQEYGIERSEKEIIGLLTSLPLLEQIVRNL
RGTKESEYPSANFYFTKESHIHTLVNLVTLSDLPIVMPHVPELDYMSYISFEVYERSKGD
SKELSVRVTLSEGAHSAVLDASLDAKHALQVQPRRALTDYISLDRVIGILERHSKKAETL
HLTKSTTKLEGFLPVEGDEVYRGVKSKLEQIREFAVRQPGGSTYSAASDKGE