Protein Info for mRNA_1977 in Rhodosporidium toruloides IFO0880

Name: 10345
Annotation: HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 PF01652: IF4E" amino acids 171 to 380 (210 residues), 92.9 bits, see alignment E=9.6e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>mRNA_1977 HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418 (Rhodosporidium toruloides IFO0880)
MASVADLVKHHSEQIRRASPQPPSPTLSRKTLAPTSPSPQPAQLPDMSDSEKTATTATDR
VEASAAEAAGEQQQPQDHTLGDIQEADKSGEESALEEGEIHETAEEKEAKLQQDKDDAGD
EPSSSSTPASAPTSDSPLAKILEALPTLPEKTQESVRTNLERIADYPRELPLSASWTLHF
SDTSGTKSNSPAVTKEAYTQGIIPLFTCTTVPSLCGQLKAFKRAASSRQSRNGLKRTRVL
PGDANEGEDGFGLTRAGQNLHFFRTGISPTWEDPYNEKGGRLTISPSPITFDSIYERLIL
LLAGASLELQTSHILRTEGPSPNSKRNPSASATELPEGMVMGVVASRRARGDRIEVWVGG
KGKKEPAPMEWVDRFKEVLGDELGLPELKTSRYKKHLS