Protein Info for mRNA_1992 in Rhodosporidium toruloides IFO0880

Name: 10360
Annotation: BLAST protein of unknown function [Taphrina deformans PYCC ...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 655 transmembrane" amino acids 51 to 78 (28 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 200 to 226 (27 residues), see Phobius details amino acids 524 to 540 (17 residues), see Phobius details amino acids 555 to 582 (28 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (655 amino acids)

>mRNA_1992 BLAST protein of unknown function [Taphrina deformans PYCC ... (Rhodosporidium toruloides IFO0880)
MQHGMQDVETGFTPPSLDYHSLAQTPSLDEQKYRSNVPSAPPKPKGIARTLFIVIVGGLA
LALAQLAIPAVLVAYIFVVHNGSISLANRTVYTTAPLGRVTAIANFLETVVSHTAAPAMA
LFGYLVAARWLRSSVKKDSKSLMTPVQRVLYALEMKLLNSANLNSIFRAYHLRMKLNSST
RRFRKNGVALPRSVKRTLGLLVWLTFWRYVVAAINTAFQATAIAGLVPDRLSPGLTTADF
TVGRALNQTRCDVASASASRLAADSCGLENGSNNGMFLYMPQAERVLSNSSSVNSVAWLD
DNTAILTDPTLPDMRFTASSPSIWSDCRTETAWCLCEGNGNPVYDGVNAQTCDVGPEAWL
ALDCAPSVRFNATALLNQVESGTGGSFPAASLLTANGSLTFTPEVDPTTRTASLGIILAT
PTYSDGVDDDNWAGSTGFFRHGHSGSWNVLVCDLWASTVVYSYSPSTGFSYMSRQPASLD
LAKYLTYHADVGIQAVAQLAEGAGLGNSSASYVDVFGRHLSKSVLSMASVLMTPTAPISV
SGGDVLGTGLNLPLFLTYLATSVVSALTILFMTVFIVAACLGTPRDLRPFVKPVQARLTD
STFLANWLYGKCTTNPKRIYSDEALDLFEPEQESERLAMEPRVDSYGWSLRPARL