Protein Info for mRNA_1994 in Rhodosporidium toruloides IFO0880

Name: 10362
Annotation: K03235 EF3, TEF3 elongation factor 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1117 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00005: ABC_tran" amino acids 464 to 589 (126 residues), 70.1 bits, see alignment E=1.2e-22 amino acids 704 to 933 (230 residues), 93 bits, see alignment E=1e-29 PF00385: Chromo" amino acids 816 to 865 (50 residues), 34.5 bits, see alignment (E = 6.2e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1117 amino acids)

>mRNA_1994 K03235 EF3, TEF3 elongation factor 3 (Rhodosporidium toruloides IFO0880)
MPSVDQMEFTPPASALLQALYASTTRSARTSAASSLASHVVSNGLRSLAADNILDDLTRA
ARSKTPQEKEGAMVAFDELFRKVGLSVGASDPFFVPLLPCILDNLQESGKTGSIKDAAEK
AAKQLARLPPPELAPKVIEELFLYLETNAKWRSKVGALELLSMFAVTAKDQVAERLGEYV
PRLVPSMRDTKSEISSQAEKTGVALCQVLTNPDIQPFVTDLVRCMADPTTVPAAIKRLSS
TVWVREIDGPTLAVVSPLLTRALSEKGTIVQRQTVVLVTNLFKLVRSPDLAALHAPHVLP
GIERIIESAAFPEIRAFAEEAKRAVDKSVVGASVPAVDHFSEAAKDEQTALSQLVELAEK
HTGERPDGFAQQSFRSAAFALAQLVRKRDLSEKLWRETYVAPYLAHFVGKDAALAISDEL
LKRWVAVDKERNRVEGADDDDDEEGDIVVDLPFSLAYGGLLLLNHTVLKLRKGHRYGICG
ANGCGKSTLLKAINRKQIDNFPMDLKAAYVEHDIDGDETGITVCQLMIDEPRISATEQEI
RAMLKEMGFSEERQDVPIQSLSGGWKMRVALCRAMLMKVDLLLLDEPTNHLDVQSVAWLQ
DYLNAQDQVTAMIISHDSGFLDAVCTNIIHYHKKQLVYYRGNLAKFVEKYPPGKTYYTLS
DEVVKFTFPPPGSLMGVRSRTRAILKMTDCTFTYPGASKPQLYNATCAVSLSSRVGIVGP
NGAGKSTLIKLLTGETLPDSGRVEKHPNLRIAYVAQHAFHHIEQHLEKSAVQYIMWRYQE
GVDKEQAMKATRALTPEEEAQLKVPIVAKTGETRFVESIVGRQKLKKSYTYEIKWQGLHH
KYNTFVPRERLTELGFSKLVQEFDDFEASREGAGSRDMSVKLVRQHLQDVGLDGDIAEYN
EMRGLSGGQKVKVVIAAAMWSKPQVLVLDEPTNFLDRDALGGLAVGIREWSGAFLCISHN
QEFVGALCGEIWTVEAGRLSMKGKAAVDDGAFDSNPNSARDTPIGTPGVATPASVETPVG
SGDEARVAATVEGAGEELNFKAAKGRKKLTRKQLKEREDRRRARTLAFLSSTVPGAVREP
DTDSDEENPIHAQQKLRIPSKAKRSGTSTPTIAGMRT