Protein Info for mRNA_2016 in Rhodosporidium toruloides IFO0880

Name: 10384
Annotation: HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 925 transmembrane" amino acids 283 to 305 (23 residues), see Phobius details amino acids 317 to 345 (29 residues), see Phobius details amino acids 738 to 759 (22 residues), see Phobius details amino acids 773 to 793 (21 residues), see Phobius details amino acids 814 to 834 (21 residues), see Phobius details amino acids 866 to 886 (21 residues), see Phobius details amino acids 892 to 914 (23 residues), see Phobius details PF13632: Glyco_trans_2_3" amino acids 541 to 760 (220 residues), 156.4 bits, see alignment E=4.6e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (925 amino acids)

>mRNA_2016 HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448 (Rhodosporidium toruloides IFO0880)
MATTTNVAAPTMERQHSEARTESSTSTNRPLSFTPIASRRPSHLSLASRRSSYADSHRRL
RSIRSVSVVSELGADLAAIAKAHKKQFLMSEHIYRRCEALGWFPDADWGNIVAVRATVGT
AGSSSYASYPPANEVDGADVLLEGLATINAEAAVIVSSHVVRSILQTIDDSQERITLNDD
VSIQILDTLEDLKCAKRHQYAAFIRSNLALVLWSDDVSTLIPNGQTISELMLEYIWKQQD
EPTDVEDEAEKEDAAKKDDVDLEAAEEAQAEAFKRRPVGLLSPLHVGLALGINIFVSLNT
LRILITEYLTDGYWPRLLIALAIPFQFCVSQFFCVIVVAIILQLLGPVKQMSMCNRYYSG
VKPPRMKGPLPDFTILMPVYKEGLESVLQPTIRSLQEAIKTYELQGGSVSILVCDDGMQL
LNERDFATRKAFYEANAIAYVARPGHGKHYKRAGRFKKSSNLNVALELSIDVEKRMKARR
PSRTPENPWTHEEEQALYEVCLREAVAETQRVIPAETEEEKEKPRTLGVWAAGNIRIGEL
ILIIDSDTRVPADCFLDAASEMHWSPECSIIQHVSDVMIVANNFFENGIAFFTRLVNTSI
SWVVANGDVGCFVGHNAFIRWSALQEIAEWKEEEKRWQIWSESHVSEDFDCALRMLVAGY
DVRWATYSNGGFQEGVSLSADDEINRWQKYAFGVSELLLHRFKDWPTKGPFTPMAKHFFW
SSNLPIHYKFSSWAYMMSYYGISVAFPLSVAGYILYGLYIPSLDNAYLPSWKVNVSLFVV
FGCASAFAFAILRYRSGQCGLHIAMWEQLKWTPFNTLFFMGLSIPVAQALLAHPIGYDMT
WAATVKEATYATIFTELPAIFRKFRTTFALCFACIVMVVVFAFIPIMEYQILDWVSLVPL
LLVVLGHILYPFLLKYVPIRSLGDL