Protein Info for mRNA_2017 in Rhodosporidium toruloides IFO0880

Name: 10385
Annotation: K12600 SKI3, TTC37 superkiller protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1571 PF13181: TPR_8" amino acids 65 to 95 (31 residues), 19.1 bits, see alignment (E = 6.5e-07) amino acids 806 to 837 (32 residues), 12.2 bits, see alignment (E = 0.0001) PF13432: TPR_16" amino acids 777 to 836 (60 residues), 30 bits, see alignment (E = 3.8e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1571 amino acids)

>mRNA_2017 K12600 SKI3, TTC37 superkiller protein 3 (Rhodosporidium toruloides IFO0880)
MRGETPTSSSTSTTASFPSLPPAWMSVFVKPKLKALKEALAKKDWPGVEKNASAVLDFES
SNYNARVFLALALFNLGKPEESEETYKKAIEQSPTQALARQGLATLYEKSQRWTDYAREL
QGLMQLFADSQDAPKYAESLEKLLDVRRKHGTKDELVETLSMLLPSSPQHSLLRTLPPFD
PTAPTATSYPTVQQAVTSPLRTLLEIIAHISEKETAAVDAEIKKRRQRLGGPALTAEETT
RQVQAEMLPQSQLPALWRQVLDDPDAGNDEPLRRDVERRLLAHLRMTLRALPSSFDLPSL
DLSAKATPKTEKQIEAERNAKDGYRAQVEDLAHGMVVIGVPDGSAWEVEVEWSDSFADGR
GLEGLTKGSKDMLQRLADTFPEAGISRISRALLTRLAAAEAAARPAVDGDAADAPQEERP
QGPTDDELAEIIEDGLAKAPPSVVAHLLAVSFFRSQKEWDAVVQVAEAGLSALATTHTEI
GRALPRTRRALETSLALGLVHHDPPTHHLRALRLVESLLGTAPPPPSSPSAPALPHPDPE
LLFAKAIVLQTSDKQAAALKVWDQIIALPPGSLDADTLVKAKCERAWSTHLAGSSEDALP
QLEEVVASFEERKTRRDKEREETEKYRSKRGLEKPEGVEEGEQEEEREERAIAWWRLGEC
LWKLGDSTPDRTQPAYDAYISALRASPSYAPAFTSLGLYYRSLATPDWERSSKCFQKAFE
LDPSQEVAARYLAEEFAELGEWILVEVIARRVIDGNKGRAGMGGKAAARLAWAWKAIGGS
ELNSKKYPQAITAFQSALRGAPDDVSTWIKLGVAYRHSGKHVAALKVFVKALALDPSFWF
AKYSIADVQREIGLLDPAIKTFKEILVDRPDELGVKVVLAETALAKGLGEQKQGYIVRAE
ESLLEALEDSMAVIEGGSASRVAWKVTAEALVGLSRLSDPASPDPLRAALARVLTYLSKQ
DVDGKMAGLTAVTVADVRAAVDTKPAVTAAALAVLSFKMRVLLETQNEAAIGSAWFDLGV
AISNFRPHLSALSTSSVTAEQALQQSIRCLKYALHKEPLNASFWNALGVLSFDLSPRLAQ
HSFIRSIEHNSRSAVPWTNLGLFYLVHGDEDLANQAFLKAQVLDPEWAAAWVGQATLADM
AGHAVEASVLLEHAVSLGADAPEADIAFTSRAFEKYRSSVPSSSLAVAEPSPVPPPSAIE
VLSAPLFSLGRYLSHHPSDHTALHLNALILEQVGDLASACESFEKAAAIIEELYEVDESP
AVEGQYVIAQTNLGRARLAAQQHDGALEAFEAALSLLTLEDSPAPGGLTKEQSVLLYTEC
KLGSSVAHVALGDSSAAKEALATAIDDVESYRIGACDSHLAVALGRVHWAEGEEDRALSA
LLDSPDIPSGRQTPLFLRRAIYAYAIAANDTSLLQTTDSFTWNAAVKYDPDISHLSTLAK
LAKRDIDGALSTVSRSLHAFPWAPAFRSRTARLITSLPPIASDATAANNLEFVGRLMRTR
VPQTEASSLRARRSRALGIVALHKAGEAETEEEADRLNEEALRFLEKSVYVAPWETEGRE
ALQKLMAKLDS