Protein Info for mRNA_2019 in Rhodosporidium toruloides IFO0880

Name: 10387
Annotation: K07088 K07088 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details amino acids 450 to 474 (25 residues), see Phobius details amino acids 494 to 504 (11 residues), see Phobius details amino acids 525 to 548 (24 residues), see Phobius details PF03547: Mem_trans" amino acids 46 to 502 (457 residues), 63.4 bits, see alignment E=6.6e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_2019 K07088 K07088 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MTTPGVRELIWLSVKVRLLLSAASFGRSCELTQRLAVLCDGFYCLQPLIRIAIPAAVGFT
LVKRKLFPGEGTKALSLLIINFTLPCLLFSKIVPSFTPDNVHALGPIILAAFFYQALPGI
LGVLARAITETPRCFRYGILSAYMFGNWGDLPTAVIYSIAANAPFNGASDEALGIAYVSG
FILVNYISSFPLQGLRLVQVDYHHPPDPARELRYEDGEFGAFRKYANRLVFGRPMRHELE
EQRCRQLSKEGAGKDVSEGELDLDGRGGEATISALRYRQPRLRSIATQTDPNATSRTSRT
PVTGLSTSDCPPLETVPTNLSIGSAHTQADQAGAPSDAQASDASLSQHPSTTTRILDSIW
RLLRPIVTSPPTMVLLSALIIALIPDLRILFIPPTSSDASFAPTAPDGLPPLAVLYDTAS
FVGAASVPLGLIVLGASIAKLRLPKPLSRLPLAGIVAMALIRLVVVPVCGFFFVKQLVKI
GMVEETNAVLRFVMVLFSCVPTATNQVTYQIIFAPSGVDSNADLLAAYLLAQYAVWAFSS
VVLTAFNLNSLKF