Protein Info for mRNA_2021 in Rhodosporidium toruloides IFO0880

Name: 10389
Annotation: BLAST deacetylase-like protein [Drechmeria coniospora]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 128 to 150 (23 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 227 to 256 (30 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>mRNA_2021 BLAST deacetylase-like protein [Drechmeria coniospora] (Rhodosporidium toruloides IFO0880)
MAEQRSQTRTKSSKAPSAASWSPSPSPSPPSSPSTRSPDLSLSHADRLKLFEQHGPMRPS
ELGLPNGKDRDKDPMVVFSPEELERLVQQQQLAGSEGADAVKEAINGTQVEEEPADEAED
LMLWEEIVNAILWTVPFGFLFTGMDYAVHAQFGQELVPREEFTRLLNFLPALLLLNFLIS
RPSSRALLPPTVLQSALTVLSISTGISTIQTCTSEGYLRVMSRAPALGVVWCWTIVRLEL
GWSILALAGVGLGVWARGGDMQWLKGLV