Protein Info for mRNA_2036 in Rhodosporidium toruloides IFO0880

Name: 10404
Annotation: HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 PF10199: Adaptin_binding" amino acids 187 to 413 (227 residues), 33.1 bits, see alignment E=3.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>mRNA_2036 HMMPfam-Alpha and gamma adaptin binding protein p34-PF10199 (Rhodosporidium toruloides IFO0880)
MDSQSTVLVHTVNPLTASHAHALVHRIRTHKPRQRTRTGAPAPASPDSASSPPPPATPAP
SSSSHIPWRIENKYYTADVAFRILEHGEEGEGDEPAVIVLAGADEDPSTSTALSTLLSSL
SSRSPDPPEVALLVTLPSSSSSSAAPSSSASSPPNSPHEAWEDLALAHGFEWVHLTSPSL
NDEEGDEGLARVVGALQAHMWEGMERVESVRPTNGRAPRGAASEDELDVDKGHEEGDEEE
WSALGGAPPLPEPRKPYGSTLATDRLAFPETFLPSIPRRAPSSNGNEAHDAFDDDFAPFV
SASTPTADDYSATHDQPTAFPPFSSSPPSSATALPPPPSDASPSHLYRHPSFSFPDSHRP
PSPPSLQAPDPDADAEDGLEDLFSRISLARSQAKVGEMGTEERREWAERVVRDLMGGLGS
EGEEKGEGEGE