Protein Info for mRNA_2044 in Rhodosporidium toruloides IFO0880

Name: 10412
Annotation: HMMPfam-Domain of unknown function (DUF1793)-PF08760,SUPERFAMILY--SSF48208

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 901 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 806 to 828 (23 residues), see Phobius details PF17168: DUF5127" amino acids 101 to 369 (269 residues), 150.5 bits, see alignment E=9.9e-48 PF16335: DUF4965" amino acids 376 to 533 (158 residues), 124.1 bits, see alignment E=7.3e-40 amino acids 567 to 608 (42 residues), 41.4 bits, see alignment 1.9e-14 PF08760: DUF1793" amino acids 614 to 783 (170 residues), 136 bits, see alignment E=2.8e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (901 amino acids)

>mRNA_2044 HMMPfam-Domain of unknown function (DUF1793)-PF08760,SUPERFAMILY--SSF48208 (Rhodosporidium toruloides IFO0880)
MLLRALTALVLAAATAPALPDETDYTPIVVPLAVRSPYLGAYLTGRQDKNLATMDPHFWT
TMPLSWKGLLRVDGETWNWMGNLTDWPAAINASVRHTAAETAFTLTNDPPTVALHASFLS
PVTPADIFRQFVPFSYLHLTVESLDGQPHEVEAYSEINGLWLADEEDEQIEWEAVERTQE
GWTGLRSRLRNQRVFTEAYKKDPFPGEMVSTDRILQGDVWYAAKTPAPSTVRTTFSAGGD
AMETRRAFAQTGGLLSIGNSTLPRPIRTRSSSNSSQILDEPVFAFSHSFGRVSPLTPLSH
RSALLAIGHVRDPLVRYMAGSAESPRLLHLRPLWASTFHTAEHLLSWFLDDYPTAKEMSD
AYNSKLYADARTVEDQEYGHVVAVSTRQVFMALEPVWDESGSTEAGLVAWSPITREPIPA
MVMLKEISSNGNVQTVDVITPFLPFLLYSSPTLLPLLLEPIYRYMSTGLYMPTPPAHDLG
DHYPNATGHNDFLYPGLPIEEAGNMLALALAGMRVSRPSTAPLAVHQRLLHWWDSVGSDA
RPQAGWEAEVGVGRDHRREGARMAWAQAREYYPLLKRWAQYLEENSLFPGNQRTTDDFFG
AAPNQTSLVIKGIVGLRSMSEIAHDLGEYADRDYFRGVSERFREQFLQLAVSTDKSHLLG
QYNNQSSWVMHYNLYFDRLLFTNDYIFPESIYEMQDRFYPTVAEPFGPPLDSRFKTRTKT
DWLAWTASLFPRSSQSRSILHSALARYFRQSKNAVFGDSITPQEGWSVGFLSRPVAGGHY
AALGREVMERAWEQRQREQRESESRGAFWATVLGAGGAGTGFVVWRWLKRRNARSGYVGL
AGRGEPGGRRGSEGIWLAESPRSVFELDSVDGDDDDRSDEAERRRTGGFNEDDDGKGLDL
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