Protein Info for mRNA_2064 in Rhodosporidium toruloides IFO0880

Name: 10432
Annotation: KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03388: Lectin_leg-like" amino acids 249 to 336 (88 residues), 22.1 bits, see alignment E=4.5e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (521 amino acids)

>mRNA_2064 KOG3839 Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans (Rhodosporidium toruloides IFO0880)
MLVPAASAALLAATVARAASSEPWTPPENLHYEAEHSWRGLTEDGKVGTGFDVSGHASVL
SGVHDFLRLVPSVPLAHGAVFSRKPLTSKEWIVEVAFRVHGPPTTGLTETGEDGKVKRLH
KGGRGLAFWYTKSGLPGPAIISSDPKTKVSPPPPVVPETPRDPHDHELSLFGSRVSFDGL
GIVFDASPNAPVWRRSDQRNYVHAGGDEPSWGVGTTGVVSGIIDDGTQKWLDADGKAPQG
EEEAAYLGKAVGECEAAFRNAQGLLWARIAHFNHTLRVDLDLSPHTTLAKAGRHYEHNCF
NLEGINLPANSYVGISGLASGNTEPDVVDVYAMDVFEILQDYDPSHHVETEEPPEDLTPL
PLEGTSADAVSTLTHEMFLSQAKMVEAIDDLARKVESVSNLVSEMARHGGAGVGRGPPPT
TGAGGAGSEMCVRFFSRSQLSCRRLRAHDDVDVAHSPDARLSTLESHLRDLVAMGQARDH
ESFDQRDALTHVKQLSDRILVEVQGVARRVDEGKVRAALSS