Protein Info for mRNA_2074 in Rhodosporidium toruloides IFO0880

Name: 10442
Annotation: HMMPfam-Chromate transporter-PF02417

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 103 to 125 (23 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 173 to 182 (10 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 326 to 345 (20 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details amino acids 394 to 417 (24 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details amino acids 465 to 488 (24 residues), see Phobius details amino acids 508 to 525 (18 residues), see Phobius details amino acids 531 to 552 (22 residues), see Phobius details PF02417: Chromate_transp" amino acids 39 to 199 (161 residues), 88.4 bits, see alignment E=3e-29 amino acids 356 to 540 (185 residues), 110.7 bits, see alignment E=4.1e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_2074 HMMPfam-Chromate transporter-PF02417 (Rhodosporidium toruloides IFO0880)
MPSTTAAGTRDNGSTHLDNCPPLDRRSIPLGVRLAETVREYWDLGFTAFGGPGVHVVILR
RRLVPKWVDETTFTDLFSLGNALPGPGSTQLAFSLAVVRNGTLAGFLAFLIWSIPGAVGM
AGLGAGVRKFPERLPPIVLALLTGLNASAVGLIALAAYQLSKTAITDSVTRLLVLLSASF
GICYHAPWMYPVLVFAGGFVTLLFDFRRQILRRLPDAVNPYAIRARREAAATPLEPLQDP
NYDVELESLGEQRRSSTGEDGAQRVTEDDDKPRGAEDQAADTVRTTLRQRNGPSVHPQPT
PTPASTIVEAPSTERSTPIMVLNRKIAFALGAGFVVYLVTIIVVRSQLDNPPRALDFFTN
MVIGGTIIFGGGPVVIPLLRQYTVQPGWVESRDFLLGFAILQAFPGPNFNFAVYLGVLSL
PHNPVLGAFLGWVGIFSPGIILKLALLPLYHTWRKHAVAISVLRGLNAAAVGLVYTAVWQ
LFLVGYIYTPVSGTIPTQSSASGPLTSNPFWGVVASFAFVATQWYKSPPAVTIVGGALAG
MVWFGVVGASGVERQQFLT