Protein Info for mRNA_2076 in Rhodosporidium toruloides IFO0880

Name: 10444
Annotation: K15073 UFO1 ubiquitin ligase complex F-box protein UFO1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1177 PF00646: F-box" amino acids 137 to 179 (43 residues), 23.5 bits, see alignment (E = 4.2e-09) PF12937: F-box-like" amino acids 138 to 181 (44 residues), 37.5 bits, see alignment (E = 1.8e-13)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1177 amino acids)

>mRNA_2076 K15073 UFO1 ubiquitin ligase complex F-box protein UFO1 (Rhodosporidium toruloides IFO0880)
MTSSTPSRFPKDSPDTPNTLPDTHDPSTTLINIPPFEPASSATTPSRKDRKGKGREKEGF
GHVRVSCVSIEAAGREVWPSRRMSGCAERARTKEQRDGVKQAGRASSVSGDTCREPSNRR
TEDTSDLHSLRACRSSPIASLPLELLAHVFAHLLPYALGTCQLVCRAWHDVVVDEASWRT
AFETYYGVTPDSLGRRIEPSSWRSEYISRVSLLRHWHRARTPTVIHNPSLGALSHVHINL
PSVSSPVPGTSTPPASPRTADSASLTSATLLSLSLDMGAAVHSSPFTGKVSKRPLFASPV
DHLGRPLGLPIVSATSVGVSIDGTKIVWGMRDGSLRFVNSSPTGGRGTAGGTIEAGEVRS
LPDAHREGSAVQAVAFSGAGGTGGGPMMRGVKQRTDVFVTAGADGGVAIWSFAIPASVAG
AAGVRDRPPVAVKAWQGRWDGALDAAPAAAAGTAAEAAPRRRVKATSIAFDSGWVGRYHG
RPASVAVGRSDGKTVVWPAVYLDEEKPTFANDTDARVLPAELGGKVDYLVCDPPSNPTAP
LSLLTHQAESSTFSRFVFSATSASPIRTTFGHPQPDHLSALTAFAVDFDEAATSTASVPS
TPAEGKISFHPRPRLFTPSASSSSLAFPSLSRSTSTSSIFPLSTGADGALAGSFGQRKYV
AAGDKDGRVFLWNWEAKQSEEEQERGDLVPPSVQIQGLEIDGGGSASKVTALELTDAGVF
VGGLDGTLRFYSTIGTAHLLQPPIRSFRDRTAPRHPSRMLAQGLIADDEENRWLVSHVRA
SREAVVAAIGGRILAWRTSSDVKKKGVKAAGGKLTARQERFKANMELQHQVRESINALSA
ESAARLERRREEERMSHDLGLPPTLDNMTEEEAVAYAMLLSMDEQEAKLFENFEDEPDWE
QVPDEWLDSDGLVLDEDYERSQASTSALHDEAEDDDERLSQATSRGGRPSQSLSSSLSVP
SSPFLGSSLSHNSSSSPASRGVSYNWKPVSPSLRALGSPPSSFNPHAKLHISPRLGPTYG
STGAAFTNDPIPDMSPELWPVASSPASPPGASFGGRRTSTGASSPLSPATTLSPSLAAIA
APSGTPVRRGWSEVARSAASTPGSASPSPASRLSTSPSAPTSWPSPPSTSSLLAAQLRQS
ELSAKADEALRRQQQEEEDLRYALELSMVEEASRLEI