Protein Info for mRNA_2083 in Rhodosporidium toruloides IFO0880

Name: 10451
Annotation: K06276 PDPK1 3-phosphoinositide dependent protein kinase-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1148 PF00069: Pkinase" amino acids 441 to 716 (276 residues), 206.5 bits, see alignment E=1e-64 PF07714: Pkinase_Tyr" amino acids 441 to 696 (256 residues), 100.5 bits, see alignment E=2.1e-32 PF14531: Kinase-like" amino acids 541 to 661 (121 residues), 26.4 bits, see alignment E=8.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1148 amino acids)

>mRNA_2083 K06276 PDPK1 3-phosphoinositide dependent protein kinase-1 (Rhodosporidium toruloides IFO0880)
MSASIRGGFPLSSSSNNRRRRPSASGLSLSSPDVPQLHSMPTRHESPQTHPPTGSPYIHH
HHHREPSGGPPLQPLTPLHNPATASHTSSHSSSGGTSSPHNPSASSLSLTSISSTSTTHT
TTTGVSRASSTRSTSSVQAVPMRKPQRAPAVPRIVTRGMNALGAYGVGPASAAQSPTRGR
GEGVTPMASVVGDVKGKGRLVDMEEGGESSEAGSGSGGGGKRPSMLQRSSWRRRGKGSNA
GGGDGSLPSPLPSPVHEGGSIPNSPVGGNSDVELPPFRPRAGGARTDSTGSGSISRGRGT
GGEEESAAAAGWTRPKYDRADSSKKEDLPRLRRSQEELNAASLVQDAGRDGSLSPSRLEG
GGPPNGRPPPLNAHERQTSTSSTAMPGSPASPTTGRRPDWAAAGEERRGRPLTVEERQGC
IGMTPNAMGVVGNRRSTEDFEFGEVLGEGSYSTVTHVTTVHPPYRQYALKVLDKEHIKRE
RKTKYVLIERDTLKALDGHPGIVKLWWTFQDEWSLYYVLEFAENGELLKWIKKYGSFDLR
SARYYLAQILSAVGFMHDKGVIHRDLKPENILLDRNMRVKITDFGTAKLLKKEEMADGHP
LDDPMGRPRTRSFVGTPEYVSPEILSEGRESSFSSDFWALGCVLFQMLAGRPPFQARTEY
LMFQKIINLQYEFPLGFPADAKDLVEKLLVVDPKARLGGDPANGNGIEQVKNHPLFTSHI
APSSSPPVSPTRAVDSSSPIEAPGAKSAASSVSTGGQRTSGEEEKSTPASSVHEPFAELS
PDVAAQKTPVDALTGATADLALSTPQQTPPMTSTPQPELATPTNPSIAPAPHPLDAPVDW
STIWVVEPPQIKTGLTPPAPTIRGEFVLLGGNEGANSSQAPSTTGTGLTGGRSYAESGAQ
RDEDAESDFGERGSVSEEDDGDEVGDSPTSATGGEMPASGAGIGKWAGVLLPSETILMLS
PVLQKPSSSAAAARTAILSRSSRIKLPRNPLTLISSSASAPPSTQPSPQNGTIPLPSPSS
GGSASSINPLGAAAVAAANSPPTPPPGSKPRTLILTDYPRLLCIKETTERITVKSEVFLG
SALRGGVKKEGASAFVAVEPSSKDSRGFTVKTSARNYKYEEPYGQASRWIHELREAHQTG
LLAPSTQR