Protein Info for mRNA_2088 in Rhodosporidium toruloides IFO0880

Name: 10456
Annotation: K11539 CBR4 carbonyl reductase 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 PF00106: adh_short" amino acids 32 to 227 (196 residues), 163.4 bits, see alignment E=6.9e-52 PF08659: KR" amino acids 33 to 176 (144 residues), 63.3 bits, see alignment E=4.3e-21 PF13561: adh_short_C2" amino acids 41 to 274 (234 residues), 191.6 bits, see alignment E=2.5e-60

Best Hits

Swiss-Prot: 56% identical to MTDH_UROFA: Probable NADP-dependent mannitol dehydrogenase (PIG8) from Uromyces fabae

KEGG orthology group: None (inferred from 58% identity to lbc:LACBIDRAFT_256071)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>mRNA_2088 K11539 CBR4 carbonyl reductase 4 (Rhodosporidium toruloides IFO0880)
MSTTKIVSQEPAPADFFAQPNPKGFTIDFEKKVYVVTGGNRGLGVGITEALAQANATVAI
IYNSAKDADEVASRLSKKWSQTIKAYQCNVSDAEKVKSTFAQIEKDLGEIQGVVANSGIS
VVKPALELTADDFNKVFGVNVLGVFNTAQAAAALWIPRKQAGSIVVISSMSDTIINSPIT
QVFYNSSKGAVSNLTRGLAAEWAPHKIRVNNVCPGFIETDQTMHMDADLRSNQCKEVPLG
RFSKPYEQAGQVVFFLSNLSSYQTGSSAYVDGGYLCW