Protein Info for mRNA_2091 in Rhodosporidium toruloides IFO0880

Name: 10459
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 145 to 167 (23 residues), see Phobius details amino acids 173 to 197 (25 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 349 to 367 (19 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details amino acids 412 to 434 (23 residues), see Phobius details amino acids 468 to 491 (24 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 427 (402 residues), 144 bits, see alignment E=3e-46

Best Hits

KEGG orthology group: None (inferred from 41% identity to scm:SCHCODRAFT_15910)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>mRNA_2091 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MEGEAEHAWPEMSTTRQVLLVLTMTMCMMLNIMQVQSVQLALPTLGADLNIQTTNLQWLI
SSYSVAFGGLLLLFGRLADIYGHKKVFIGGMIWFVIWSIACGFAQNEVSIDFFRAMQGAA
LGAAIPSALGILGSSFPPGQRKTTAFALFSAGAPMGGSLGAVLGGVLTEYAAITWRAVFF
VSTGIGALIGIAALFLVPPDHAKDKTLTVDWIGGALITSAVTLLTFALADGEGAPNGWRT
PYIPTLLAVSIILFVVFWFYERHLEFRTPHPPLMRTSIWFKGRFAIVQLIGALGWSCFAS
YMFFCSLTFQDYMRLEPVLATVRFLPSSITGLILNLIVALLASRVPAHILITIGCLGTGL
APLLFAVQNYEDTYWRWQFPAMILSVFGADFIFACGILYVSHVAGHGHQALAGSLFNMST
QIGTGIGLAINTIVQDKVTARATRNLGLVYDPNARNTPLEAIHQGLNAAFYTCSGFAFLA
TLISATCLFGIGKVGHREKKGAREGGKEQV