Protein Info for mRNA_2100 in Rhodosporidium toruloides IFO0880

Name: 10468
Annotation: K13184 DHX9 ATP-dependent RNA helicase A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1498 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 1188 to 1206 (19 residues), see Phobius details PF00035: dsrm" amino acids 317 to 389 (73 residues), 21 bits, see alignment 1.1e-07 PF00270: DEAD" amino acids 540 to 709 (170 residues), 26.5 bits, see alignment E=1.3e-09 PF00271: Helicase_C" amino acids 808 to 942 (135 residues), 47.8 bits, see alignment E=4.3e-16 PF04408: HA2" amino acids 1008 to 1098 (91 residues), 58.5 bits, see alignment 1.9e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1498 amino acids)

>mRNA_2100 K13184 DHX9 ATP-dependent RNA helicase A (Rhodosporidium toruloides IFO0880)
MLVRSLLLLRAATHAARPSLLRQCMPASRNARPRPLDSLSSTFLSPPTQHNRTLATSAAL
EMNSTGSLGQFRRRGGGGAVGRKRGGAGGGAGPSRSAKVPLPTAPGPLHDKTYVESVYGA
MGGRGKPPPKLIENAKGVISNYVKALGGDPKYEAKKVNVLGEEVTRVTIVADPDPPANQQ
SWSYNSASGPSLPPMIQPIVGTGDAKTAKEAEKLAALHACMQLSAKGLFTSSNLPLRAKG
GFPPAAAKPAAQPPTSYAPSSFFDGPANSTTYNSTGPAPMAVDAAAPPPPTNNGSSVTLS
NGDRVSLEEARAFMDFYCQRFNFDKPSLEARAVKIDQPAPFTRGRRRVKGNQKGQWRATL
RVAGAQIGVGEAASKKDAERRAYLDTALYLESCDPGLWDAWKQRKLDKLVSKGELPPHVS
FDVGSAEVEEELNQAVWEGQESELYQRAKEMVEREHKKAQEQWERAKRGGGADAAAAAST
NAPTVDPAAQAAQAELRRKRLEAKSQMLFTRLQNYQASTEPAIEKMRKQRASLPVTSHAD
SVIAKINTSPVVVCLAATGSGKTTQLPQLILDDAIMAKEGAKCNIVCTQPRRIAAISVAE
RVAKERGESIGDSVGYQVRFESKPPRKDGSILFCTTGLFLRRMQADLDRGPSANQESFLD
GVTHICVDEVHERDVDTDLLLFVLRRLLHERRKQGKAEVKVILMSATIDPRLFTNYFADP
DTRLPAPVIEVPGRSFPVEKHWLDETMQELRAMRIPRNEGGWVFEDESVQKYLARELVSR
LPIDERTGKVVGEIDDLDMPYPLLALLVAHVLRKSDDGHVLVFLPGWEEIQAVVKILQAP
RQFPLFGIDFMSKDYEIHILHSTVPLADQQAVFEPPPKGIRRIVLSTNIAETSVTIPDVV
YVVDAAKCKEKRYDPQRRLSQLVSAWTGTSNVLQRAGRAGRHRPGEYYGIVSRARFEAMD
IHQTVEMLRTDLASTAMHVTGLQLPGLTVADVLGSTIQPPEPQRVVAALQTLLHVGAIDR
DEKLTSLGRVLLQLPVEAAIGKLCLLGSFFRCLEPAVTLAAILTNRDPFMSPPAAKEEAD
RVKNSWAPPEFRSDPLTILRAYTTWEEMQKSNQYQRANSFAYNNFLSKPSLLNILKIKEH
LISSLDRAGVLQISAGGAAAPAQPAFGRGRFARGPVQIPPELNENGHLLPLLSALIATAV
APNFAIRTGSSTLRTSQDKSCMIHPSSVNSKRNEKSAASRQIYAFGEKSRTGPVGSKSGG
QTFLRSTTRIDPLGYMLFGAYDLRVTQEGLDCDGWLPIVASNKTSAVILDDVERLKNILD
LSLLRVFEGLNASLSRGRGRGPQQQQRGPRGRQFEKDDEDEDEADEEMVDRNDPTLSSVE
VQDLDNLTRNVVDLIQDYHNSMGPASGVGSSRVSTRPSSPSGLRPLQQARMYTSGAATPA
TSASHAGTPYSSRPPSAGGNNVYRPPGAGAGPMQIDSRGGGGGFGAGNAPSGGNWRRG