Protein Info for mRNA_2106 in Rhodosporidium toruloides IFO0880

Name: 10474
Annotation: K15710 SHPRH E3 ubiquitin-protein ligase SHPRH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1859 PF00176: SNF2_N" amino acids 568 to 874 (307 residues), 141.1 bits, see alignment E=7.8e-45 PF13920: zf-C3HC4_3" amino acids 1484 to 1528 (45 residues), 36.4 bits, see alignment (E = 7.6e-13) PF00097: zf-C3HC4" amino acids 1487 to 1524 (38 residues), 25.6 bits, see alignment (E = 1.8e-09) PF00271: Helicase_C" amino acids 1608 to 1711 (104 residues), 27.3 bits, see alignment 7.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1859 amino acids)

>mRNA_2106 K15710 SHPRH E3 ubiquitin-protein ligase SHPRH (Rhodosporidium toruloides IFO0880)
MERGAVRLGGDEGVKNEVTHIFREPIIAAIKDHAKRKGGPAADDDDDVEIVSAGKKRAAS
PGADGPARKKANKPLVTSFLVLKLNLTFPPLDGEEEGIAAALVSTKTPAGEPIALTDIVF
QQARDNAKAPHRIYLRHAETNAALVEVDPLDPASLSAPGWISMIAPPPLTKSGKPFKRAY
NAKKAPQNQPRPVVTTGAGGLLDALALFSQPHLGDEGVDVTSKLGIELVQGDSTRVLFHL
YLDVSIRPALFYTSAYSRSKRILVDRLIPESDPLQVNDDAPREANIDYFYACLRRAPRTD
KGSPVASGAATPAPPAETDEERVARLRREAKGKQRAVEPDEAQANDLVEDGEGNGREDEM
FHPPGLTVQLMPFQARTVRWMLRREGKKIAPLAPLIAEDFDGEQEDVEMDEVDGDEDFEL
AATSKGKGKAKEVEKPAAKKGKGKGKKAVSPASDASEHPIPVLEDLDEATVKEMKRGPLW
RKVTLRTLPDQSGEVQEKEVWLNRVSMRFTELDPVDQPGFSGTATPVVKEEAEDDGLALP
EMEVDGDEEKPERTVSSKKVVGGAEGHGLLAEEVGLGKTVEALSLILLHSDPKRRKLPSY
YNPISDSDVRPSGLTLIIAPTAIVGQWESEIARLTPGLRVLRYQGIMSLNKAWDAAYVVR
KFDLVLTTFDVLRKEVAFARKPVQRGLRNKREIRYRRSILVEIDFLRVMMDEAQMLGDAV
GPTSETASLVSRRYSWAVTSTPLRDKIADLRPLLTFLRVEPIASGTASLQRLLDEAESFR
RLWNEIGERTLKSQVQHELVLPAQHRYIVPVDFNAIERFHYEERYRAALRAVGLTEDGQP
YRTPGEEDVSWEPDKGELLRALTLLRQLCTHPALGQANKQALGGRVLKTVEEVYAAMKQA
AVHEIQSAQRALLDARVRRGQLLMWDEEVETRFDTALELYKSAIAEIDPIIDEVTKEIHD
AWAARKADANRDSPVDVRDKGVAGALELGFRSVEGADETELMSDRERAASTRIGALRNRL
RDLLFVKHAALFFSGHAYFNSKREEKEKAAYAAAEQLRQLMTGPFEAAVERAQAILKGQL
DARDAEGELDISDFELQFSKTKHGLMARETFEAVATTTDLLNGYAELIFQYREMIVQMLL
AQVSIAGEDATGEEYEERAVLQERLTVYLEAYTVLLGEWSYGITGTRSALGDQYKAEAAW
YLYDQEIIGEPKAPPPKGVEDDVIEDYGDALGEAVGAIAGPSRQRGRNAADEEEDEDEGN
AEQAAAEEAEEQQEPEEEEEANAGKGKGKAPRKKKKPGPKSRFQQKRSANKKKRSYKEFL
APTIETGHSAEQVLRYQLLVERLESKGENNEFAEVTPIRQLIKALKEASERSESDREITI
LDRERARLQKSLPPLEKVADRLRAELSDFTTAYNARLTYFANLQQISDDVRDPDMGSKKW
RGLLVEIELLRQDELELKASIESKLARRRYLENLNNPDAREDEETTCPICAESFSQGVLT
DCGHLTCAACFRRWHSVSRNCAMCKQPLPAGSYQTVSYRAKPAAAQEEADAPLGKDQYID
SHGVTQSFDTIPPKLNEIDEFSREKILEIQTASPLSSKSDFVVKHVKFLRRRDPYAKVVI
FSAWQEALSLLMEAFTRNGIKFVRLEGAVGKGKKEGVVATFQNDPDVAAFFLHTRSQSAG
LNLTAARYVFLIEPLLHPSLELQAVARVHRITQTRDTFVFQYAITDSVDRRVADLRARQG
TSLFIAEQGQDQEKESRLVQQKDRPSAEARKAAKTDELIDDEEDLARCILSPDHYLSLQR
ALLPARLRQNLPPIPAEPMVHAEGSGAQPAAMAGIAAAARAAVEEEEDRMDVEAGPSGP