Protein Info for mRNA_2116 in Rhodosporidium toruloides IFO0880

Name: 10484
Annotation: K01184 E3.2.1.15 polygalacturonase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF00295: Glyco_hydro_28" amino acids 18 to 328 (311 residues), 225.6 bits, see alignment E=4.4e-71

Best Hits

Swiss-Prot: 44% identical to PGLRA_ASPPA: Probable endopolygalacturonase A (pgaA) from Aspergillus parasiticus

KEGG orthology group: None (inferred from 43% identity to afv:AFLA_105920)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>mRNA_2116 K01184 E3.2.1.15 polygalacturonase (Rhodosporidium toruloides IFO0880)
RCTGTIASLDDVAAAEKCATVNIKSFTVPAGKTFELDLVDNAVVNVLGDIKFGTKQWEGP
LVQVSGKNVHFNGNGHKWDGQGSYYWDGKGGNGGKTKPKFFKVKFSGAMDSVYLLNQPVQ
GFSISNPAKLVMSNIVVDVKAGASLGHNTDAFDISSAKDLTIDGAAVNNQDDCVAINDGT
GITIQNSVCTGGHGISVGSIRTGKHVSNVVIKCVVAARKYKNNKIVDNDNGLRIKTYVGA
TDASVSNVQYIGNTVTNAKKYGVVIEQDYTNDGATGKATNGVPINGVYFTGTTNNVSVGW
KAQRVYVLCASGSCSNFDFTALKTSGGSAGSIEGTTVKGYSL