Protein Info for mRNA_2117 in Rhodosporidium toruloides IFO0880

Name: 10485
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 transmembrane" amino acids 145 to 163 (19 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 214 to 240 (27 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>mRNA_2117 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MPAFSLFSSTSAPSPDQETLTSLPPRLAVRHRSLPDLQRHERPLPPVPTDRRWSAVSDAS
SDLGGHSFAALLSRDTRRSFIVPSLHQARDPESSGVEEDRTQPGERLLAIPGADFAVAGP
DVYLLLQELHRARISRAQKVRRRTAYFAGFFSLVVLVITLWYLGETSRALARYGGRGRGV
LRWIELSAWLTVLCGWPLTVLFLRTRRPTLLTPVTLTSAFLSSTLHLLLAFSNLILSLIW
RGDLGLRCSWGTDVAWTAGRKGAFCADDSSKGWTIAATIRLLLTILIVVVWFLLLRSYAR
ALHTPSIISPSQIPSAELQALLDTHTATIVPLSAPFDPSHVAPLAQLDSNHLPEMPDRAT
HYIHASDSAWSYDPAHHRQASVGASSGSRASRAVAGVLESAGVWLGAQVWRGVGWLVGAG
RSGGDLRRDEEKGGRKEEREESDGEGRPDVDYAHERRLPDVPHAPTQPTCPPAVHGPQPR
RPLPAAPADHDYAALFRDVSPPPSTHGDYASKRSSASSASPLLGQSTAADEVYEFLDDSP
PPPPPKDAFVLERSQGLIVYVRMSDGRLVRRLSTIASESEGTATRRSRSDLTSS