Protein Info for mRNA_2118 in Rhodosporidium toruloides IFO0880

Name: 10486
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 130 to 151 (22 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 285 to 312 (28 residues), see Phobius details amino acids 323 to 341 (19 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details amino acids 380 to 406 (27 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 450 to 469 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 23 to 479 (457 residues), 258.7 bits, see alignment E=4.9e-81 PF00083: Sugar_tr" amino acids 29 to 484 (456 residues), 260.1 bits, see alignment E=4.1e-81 PF07690: MFS_1" amino acids 34 to 429 (396 residues), 74.2 bits, see alignment E=9.7e-25

Best Hits

KEGG orthology group: None (inferred from 37% identity to fgr:FG03697.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (529 amino acids)

>mRNA_2118 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MVGYTGGNVVAAGLPQTSFRHNIRSFVFALAVAFGTFQYNLDTTIINGFQAMQGFLRVFG
VPGKGGKYVIETTFQQLITSLLQVGLIVASLLIGPFSRYFGRRAGFFVASVIGCVALLIQ
TFVTSKGPVYVARLLLGVSNGALVNLVVLWISETAPGHLRGSYVSSFQIFQGLGGITGAG
ISKAFAKNLSKHSYQLQLVVLFAVPVWFMLYSVIYMPESPRWLATHDRHDEALKSLRKIR
GSNFSEAELQAELDIIVEAIRVEREVQAGATLLDIFRGTDLRRTLLACGAATLHAASGIN
FLVGYGTVFFQIAAPGSDAFRNTIILQVCGFIGALSAPVLARYFGRKTILIAGFSLMCMC
FTIVGATNEGKLIHSPKDAPAGAALVAFVCLYQFAYNMSCGPLAWAVGAEIPSQRLRSLT
FGFAMGVGFVFVWLTTFTTPKYLNELGVRVAWIWMPSCFITLLWLIFFLPETEGRSLEDL
DIMFANRVPALKFKHYVIDHTIAVGNGSEKDADSEKGKGTESRDEVAMV