Protein Info for mRNA_2122 in Rhodosporidium toruloides IFO0880

Name: 10490
Annotation: K00103 GULO L-gulonolactone oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 transmembrane" amino acids 195 to 214 (20 residues), see Phobius details PF01565: FAD_binding_4" amino acids 49 to 176 (128 residues), 85.3 bits, see alignment E=3.4e-28 PF04030: ALO" amino acids 213 to 319 (107 residues), 55.2 bits, see alignment E=1e-18 amino acids 475 to 632 (158 residues), 140 bits, see alignment E=1.3e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (658 amino acids)

>mRNA_2122 K00103 GULO L-gulonolactone oxidase (Rhodosporidium toruloides IFO0880)
MAPLPPPDQPPLDHLSTADLRRLLAPYTILAGPPLRFTNWATTFTSTSQAVFRPTTVEHV
RWAVELARREGTELRAAGAGHSPSDIVCTGGYILDLKGLNRVLDVDPTTQTFHAEGGIIL
RDLHPILLEKGSLAMSCLGSISDQTLAGAISTSTHGSGVSFPSISTCATFLDIVLPLPSA
PVVRVSRDPAEDPDLFHAALCGLGAVGIIVGVGMRVERAFKLEEEVFSMRFDEFSKRWRE
IAESAEHVRCWWFPQVGRVKISRLNRTNKAITPPSSALTSYLTSTLLPKHIHALILSLTR
YIPSLLPYHAWFMWTFHEQPGRVDWGLFFRGVWERVTGRMEGSEVWPSVKGLEEMESERE
KQEREAKEEMETKLDRPPSPASSDIGPSPSTTARPTSPPFRPLDVDRPSRPTKLPSDLLT
PPYTPPTLSPSSSPPRSISPLAISTTTSSSDEEEVYPRSGRKKLPWPILEDEPSYRVDLG
VRIFNYDCGFPQYTYESCVPYPLTGPALYTLNAFHTSELARPGYPLKAHFPIEVRWTERD
DGWLSPTGGGRGCYLGAIQYRPFNLPVPYRSYFSSFASLLHTLFTGKPHWAKSHHLSPSD
LRALYPRFDDFLRVRERVDPQGVLVNEYVRRHLVDESQGKEGEEGEMERRVRRWKVRP