Protein Info for mRNA_2133 in Rhodosporidium toruloides IFO0880

Name: 10501
Annotation: ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (696 amino acids)

>mRNA_2133 ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209 (Rhodosporidium toruloides IFO0880)
MAPPPSGALTLAEPAQPATPVSRRFPLSRYAGQRPDYAFPPREKRSPFPPSSCDGLQTPS
TNLARSLDTLNRSTQDDSSSGGTPDASFSSCDTGMSEQEGIRTPPTPPSSLRAGMDPFTS
PSPYAHKLQDDQASPSAARESIVKPADQVLRDTTNSFFPSFGDFLASHQATEDEKAGASV
WVDGGKDCELVGELEDDVGKLDLRKSEDKSAGAASTFRPFSPLKHKRDDSFTFHPSPAFR
IDSPAPNPPSSSLLLRSPEPKRHYHLPTPVLTRTPEVPHNGPESPLSHYYLPPFPATPPM
TPVHSATPHPPPKSHTAPLRPHFLAVPAQRARTVTPPGAVPFFHPPPPPPASVVALSVSS
GPSAAADAFSSEYPLSESDTAKIANLHNGRIPTLQQLAPPDHVFAAAAQQPIVNTGNVGP
MVVQAGDWRCGVCSFVNWRRRKICLKCFPYANDIGHVLTIQSQRAAYLAAPTSASHPGST
ASASPAPLMQASYRSPYVPGGGPGGEVPTADLATLARTPNFVPSAPAFVPSSAYTPHSMP
QQYSMPGPAPPLDAYFAPSPAFVPVHALAPPVSHFSSDSSGPVKSSPYPNAYRSTKPEPA
PLPPIIWSTSFSTHARPPSFSSSSAASGQKSRTPSATSAGELAEQKKKREKENERVKAGK
AVRNALQARVGASGMCFAVGGVAAGGGWKPWEQAEY