Protein Info for mRNA_2135 in Rhodosporidium toruloides IFO0880

Name: 10503
Annotation: KOG2922 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 192 to 209 (18 residues), see Phobius details amino acids 229 to 247 (19 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 324 to 345 (22 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details PF05653: Mg_trans_NIPA" amino acids 129 to 375 (247 residues), 175.4 bits, see alignment E=7.8e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (477 amino acids)

>mRNA_2135 KOG2922 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MCSVAPSDGTASLIGVGIAVLANIVVSLALNVQRLAHLKRANRDERATFSPHPKSPSRTL
PRSTERTPLIIRTRPTLDSIPSEQGTSQGASGGKRQTPEVLVSPVESHFASHQRSFSPAK
RRTSGPRTDKGFLKSKLWLLGFFLMAAGELGNFLAYGFAPPSVVAPLGMVALIANVFLAP
VIVREPFRRKDLIGVGIAIIGGATVVYASRQRDVKLTPEEFVEAISRPLFIAYAAICAAA
MSALAYFSRTKAGDRFVLVDLSLCAIAGAFTVLSAKALSSFLNLIFLDSFKYAITYAVIL
TLALSAFLQLNYLQKSLQRFESRVVIPTQFTTFSLSTIVGSAILYRDFEGVGLPSLVNFV
FGCLICATGVYLLTRDSPDGHSKSSATDSAADSLANDSAPASQRTPSVSSVSSQPFPRAT
QTLAIPDSRAGPGRRRRKLSVTLGGAYLLAASATADEEEEDDDERDERRPLDEEQGL