Protein Info for mRNA_2138 in Rhodosporidium toruloides IFO0880

Name: 10506
Annotation: HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 936 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF10281: Ish1" amino acids 87 to 121 (35 residues), 44.5 bits, see alignment (E = 7.5e-16) amino acids 181 to 216 (36 residues), 36.7 bits, see alignment (E = 2.1e-13) amino acids 226 to 262 (37 residues), 48.9 bits, see alignment (E = 3.2e-17) amino acids 317 to 352 (36 residues), 26.7 bits, see alignment (E = 2.8e-10) amino acids 457 to 490 (34 residues), 32.2 bits, see alignment (E = 5.2e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (936 amino acids)

>mRNA_2138 HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281 (Rhodosporidium toruloides IFO0880)
MKLPATFYAVLIASGIVHVLADSAPPPYADWGQSDLKRYLQDHHIPNPGNLNTEQLRELA
ARHYDQQATNLKRGSQHVFQDARDGAYDTWSDSQLRQFLLDKGVISPSSKREELVQLARE
YGLEASKTAESAWARTTDAAADAAHAVAENTSAAFYAVVDGPAHAYDYVAGKLEDTRDYV
YSTWTDSDLHSWAVSKGLVKPEEKKRRDELLDLVRKPYSDATSHVYEAWSDSYLRNWLQR
HGVVKSKTANTRDELLDLMSKNYYGARDTTYEYWSDSAVRRWLESRGLVKPNESKTASDR
LRSLIAGNYWKLRDQAYSAWDESMLRAYLDKNKVGYEKDAKRNELVTLVKEYYYDASSYI
WSTWSDAELLAWATKEKLVNAATGKSLRRHDLEKLASDNYGKTRDAIKGSWDEKSMRGWL
VKHGVLKSDAQKKKEEIEAEFNKHYTKVANKSTEYVSWSDARIRGWLRDHGVPVPMRTSR
QELLQQMHDNYVSTQSGGLHIIDQIKGQLGNAADLLRNIVGSASGVVGGAAEEARLKAKY
GEQQASSLYGDSAKTAEGYASQASRSGESLASHASRSAVSATDRAKASVSSGVLEASASA
RSVWDQGLSSASSLYSVALHSASSASSVASAEAVKSARAAGAVPTAIYASATSAGNVAAS
SASSAAAQASASLASASAAASKSAASYASHAERSLSSLYVEATKSASSASYHASKSIESE
LSRQGVAPSQISRSASSAGDVAYASATSAADKAHKSYTSFTDQASKSASSASIVASHSLE
SAFHQASKSVSSASSVASKSVSSQMKAAGYDPSVISKSASSAGSVAEKSASRLSASASSA
YHVYLTSASASASSLSKSLSSAYSSASASARKGASHVSSSAYASATSAGLDKKHASSTAS
VVSKQAEHSASEVSRSLSSKLSEASKSASSLVHKEL