Protein Info for mRNA_2140 in Rhodosporidium toruloides IFO0880

Name: 10508
Annotation: HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3017 transmembrane" amino acids 2544 to 2563 (20 residues), see Phobius details amino acids 2574 to 2592 (19 residues), see Phobius details PF08101: DUF1708" amino acids 269 to 362 (94 residues), 36.3 bits, see alignment (E = 6.2e-13) PF00646: F-box" amino acids 2007 to 2042 (36 residues), 18.2 bits, see alignment (E = 2.8e-07) amino acids 2243 to 2283 (41 residues), 23.8 bits, see alignment (E = 5e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3017 amino acids)

>mRNA_2140 HMMPfam-F-box domain-PF00646,HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF48350,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MSFFSRLSSKSKDRRSSSETGSSAAAPKEDLLPLQLPSSSLLTDASLANPLLLSTPTRNR
YGEDNDLRSLRSAETSPWVDVGETPRTFRTLDVKGKRVKVPELFDPVREKKEKVRLEKAR
LGVAEMTLLMDECGSVLKQRGLTTLGLFRPFRAAESLSAQRKLCLLFLDYMAELDAAPSS
SDSIRGSEASKAVLLHAFKEELRYANVHDAAAVLRWVRKRSFFMVRKPLIIPFLQGLRHF
SSTPSFSGSPTPSIDWYTSFLRRSSSFAPSHPPHSFSAFLLPSLPPASQALLLSTLTLLQ
AVSANAQHNAMTARRLCRSLGIYLFGMSPSSGSSSFDDLYNAWREAGDALEGCLKAFLRE
QTDLPPRLQELVDDYPAWVAAKMNGSSENGRKVRVVKVEVESKGEWRQVGEAEVNDQETG
FVARGRGAEGPTDKPARRRPVEILLAAVEADPLAGDVETDEAATAWSRIVERAKKGGEDS
GATVVLEDEVLRVLELLALDQPTTVDDSDPFAGDGSPRPRVRSLISDRRSSSFGTFSNYS
TGNLLTPSPSQRTITPTWNDFKQTGFAPTELDAANEFGLYNPEIDGRFTKPARLPRKVVE
PEHRIVGVSVCEVDEEFPDVWIDTLGESTSTFAPVAGWPSLVVAPLQPSVVSHEDGAKRT
IHHLVIYEKLLPPAHKPAPFAPRPSLPSTASQPGVHRAFSTASILGRRGRKSDIFPAPTS
AADGESTLSPGRKWRRRASAIFAPGSSETDKPKREWSSESSTNLNLPSSLSTLLPSGRRN
RKSFVAADLPPPVPAISTAVPLSEPSEKSPTSPTSPSSMVRSFSRNLVKKRSRSSLYSLS
RQRSPISEEGEPVPVPPLPAQFAEEANETAESGDAVEPETEGYTVEPAPTSPVAHDGEKL
PEATVPAPSIELAQPVVDKPEQTAPVAETAAPTEEKEVREDAHDGTISGLPVLGAPVTTS
DSAAEALPRDERNQAGPVGSPVVEPLTLVDEEPSGPVEVPAAHTDDYASPSSAEELSAAP
VDTGDSTPAGDQPVPVAEQPPVLASTEAASHQYDAEPALEQPAADAEQQDEPATPASPLV
TLSPPPEDAVQSTETILPVGANDGAAPLGLGLVNAPIQAVEPEPKRSVDASLATPSKSSN
AQLASHPTTSNSALSPASPSLTNSPTPSTSSTASRKFLSNVGGFLRRNKSTSEKEQARRD
KEEAKREKEEKKALRQLREEELRKEKKERKNPTPVSNVKARVKEIEEEQAAVSGAASTTP
TTPTRDRTFSGIARPLSMVSPRSASEALPNARAAASPSPASPTPASPAQASASPTAPGSV
PAQLFASSGPSSPSTATVEQTSQLAKEASEVSGAISAPDDVFAAPSPPVVEHDAPSTLEA
QLLDGEGAHPPPAIQVDAAPEEPAISPSTANGNVSGALAAASHEPVEAHTLVFDRDTPVA
APQQETQHLNVKVPSSFAELPSPMPSPTPFSEIDGDQHPLAEDLTEKIPELHPPVFEPIP
PAPESHTLPTVPQPVEPTHLDSSHESAAPEPAVGDIDARPHDETAADEDPRNFVTSSGVE
HDVRSATPVEHHARAETIASPAQDPSATPTKPSTSLIPPQVVHNSPSQQSLATTTSFETA
NSAAPSTTRASLDEASTAAGRARSLSFDMQTRRKAARTSPSQSPEKPSAAVAGSPSPEGA
YDSGFWDEEKQVGQKRTRGGGHFARKTANRGAVTDEVTGEAEEEPAGRVTRARRRIQDVE
AAAGVSPSPSPELPRSPDKVVAVNETPARQEPSKPRTFKPSPQWMFNFNPGYAISNTEAE
GTKLANQRKTSPLVSPEKPQGLGRESSVLLRHKHKPIAVSKSPSSNTLSQQRPKNATFFE
VLVKEDAFAIVAATCDLPARKGHGLILPAQPLNPLRVLRSTDASPFTLYRFPLPALTTDA
TLSSVKVACCGQVFAGLTGSAKVDALSKGQGDSEGKRNEHYEGRAVHWLLEVSKDRANAI
AFETMSDNAASPRTSPEPAVKESASMRLPDETWVSIFRLLTYKTLLHVRGVCKRFKGLLE
NSTFDDVFFRQAPPKRPETKQKYKVHPMLNDVDCARVTPTTAEIMHYGQGSGDETFNGYD
YPAAKEFATAPACMSIDIELNESKVGKVSNKRGVTVSQVLVACGKFWEKPVPDSVASRVG
SSRRDWERERFASLRVGSARSSQAAMMYGGWARIRRSCKSGKRQQVESCDRLSTPATALE
AMSLEATEAREVPHTAVTSPAALRLSDELWVRIFSQLGYTTLLHARGICRRLKALLERPT
FDAAFFRQPPPDPPQRRQRYFVHPMLEAVDCGRVTQEMAKITHWSKQISDFDWVEFNGFD
YATVEEFATTPACVSIEIELADARVGRVYDEQGVTVKQVLHACADFWAKPVHPWTAKKVR
EEYKWLKDKKPITALGMLSDRFFEGWEEPKNVGNGRVHLISRGFGSSFSLTRPPALHANP
FLAPLRFRQREVSRNKAGINAAELSSKTNGGQLHVGALASAPSTPALHSLLARSRFALFR
LPRMPSPAGWKPQVRRRPPPKPSLLLRLPLRLWIRVFLFLDYHALRRLRAVCRRVNTIVM
ASAFNALLFRLPPPLPLRKIRTYQLHPMLQTVDCATVTHKKARIRTSGGGYLNGYRYPAS
NEFATSPACVRMVVYLTEAKVGVLENEGGVTVKEVLLVCSRYWRKPVSSNLAAKTRREQH
LPKRGKPLHVTKIVTLGKYCKFEGWKEPSGMSDGTLLCWLVATLTIRPQPAALPDELWIQ
VFLQLDSFTLRKIQRVCRKFRLIIVVPPTAYIAGKDFDNILCRALSRAPLHTGQRLRVNE
ILRCIHLVSKKDVESDLRYMGCLSTPPASPPNFGYAFSPTSKTIVFSHPREISHVFTADE
ESFAFAPPPGLSAHQVLLRLAHYIRLGDAQGRSTKLSPEDRYYLFPGPRIAICTNEGAMR
GIWRLEGEGEVTVSETGEVWEIDLSLRSVYKPKQLDRAQAAAARSGTRVESGKSHPGRLR
ERTRSSRRVRHSHLREG