Protein Info for mRNA_2151 in Rhodosporidium toruloides IFO0880

Name: 10519
Annotation: K03348 APC1 anaphase-promoting complex subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2003 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 1189 to 1202 (14 residues), see Phobius details amino acids 1220 to 1244 (25 residues), see Phobius details amino acids 1256 to 1276 (21 residues), see Phobius details amino acids 1307 to 1324 (18 residues), see Phobius details amino acids 1511 to 1530 (20 residues), see Phobius details amino acids 1549 to 1567 (19 residues), see Phobius details amino acids 1574 to 1592 (19 residues), see Phobius details PF12859: ANAPC1" amino acids 208 to 253 (46 residues), 28.6 bits, see alignment (E = 1.9e-10) PF18122: APC1_C" amino acids 1753 to 1940 (188 residues), 108.3 bits, see alignment E=4.1e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2003 amino acids)

>mRNA_2151 K03348 APC1 anaphase-promoting complex subunit 1 (Rhodosporidium toruloides IFO0880)
MPSPLPSSPRLPSSVAAVMAHLAPCVPWPAPALHTKPPDAIRTPASSVPPSLLPHPASRF
QEVLRSTSRHSPTNAAPGSYFVRSTRENDGKMDEGLDALEELSWEGSRVVWSRGGSVFRT
FSYEEKGETVTQALFADFYVPAEPAYNPSAASPTASTSAQRLDNDFSSSLFGPYRKPVTS
SWSDDPLPLPVDPTDPGPAPQTRLDRTLIVLLSTIAFAYPSKGGCIPFPLPFRVERAWPL
DHGILLERKREGREVWAENVGAQLPTLYTLSDLCDEMKAVAVVPSFRCTSGREEVEVETD
GPIIPVEDLDEKVVFVSTMERAGEPPVAVSMNEKTRKVSIWAYGRLKAKLEGEEVVANGP
VLAELDPKGEGKAVARDGGEETNGATSVGMSRGRGSLSGTKRKLADTSAHSASMPEERSI
RRASGQYVGSSKGRPRLSISRVIDQEDELLEALSHNAEPLKPPPNATSSAALRRPATIDR
RTSMTRNDLSVTMDRMALSQGASSAGGGDLEREATIFFSEAEQTSAASEVVLQRLWDADL
GNLDTKGISAYLFDTRSPETSSLAIVLPAAHVLLILQLSTASDGSVTVSPLREVQASSAT
TVLATRSAVLDLAYLRPDGTLAVVTADGREDNADLSPLAADDRPAKLAGDASRRMVIVTE
QQKRVMTCFPLPSCRLLRDCLEALSAVLPLDDFVQLRASVLRRRGASGADSGLQDLEAVL
APLFGIDAAAAGVAPDPFEAFQRRRADHQPAFPLRASATIHHSATFANSPSPDLPDQLQA
TLLTFHLVVQDVRLSARRRKDVVKLGRLVARLAGAAGLSGWVDYYRRLLGAALEPVQIAP
GHTASRLPSTPPDLLTHLAALFRSEPRPTTHFDLASIAENFSLVPSGFYGSAVVPNRLTS
AIIRLYSLLSDGSAGRPAPRIHSAVRYMLDELHWTAEDLDGLTFAVVLPLCEAIRSCQLD
PPDNWPVEAYNLIRRTDLARQHGASQRTAPASRSQPAAIAASIDELAQRVAGLPTSSAGS
ASPTSTNASLNPVPRAARFNEDKRLEEVTRMLQFEDPVTISAGDRTIDQLTPQIQQSVLL
ALSQRTLSLPVGWGIFRFRTKTLHPSDAIKIGKINTAARIVPMPSPVALVEKEREPTAGA
PPDRFEWPDFHAGVSAALELQLDGGQAVDSSQISFNRPADLDSRHAGLLYGLGLSGQLGS
MLSSQAYDYLKSKHDPTSVGILLGLAASYLATGDATVTSVISIHLPALHPPRSSSLNVSG
MTQAAAAVALGLVHFGSARRNYADVLLRELCGIKVTSIDDGSQCREAYALSAGFSFGLIM
LSAGRRDKTRSSKEVDHLRVFRALILGESNNALPGAQSAKNVTDVNVTSPAATVAVGLTY
LRSERKDVAEMLEIPSTPRNLDYVRPDLLLLRTICRNLILWDQVAKSKEWVESQLLPFLG
GEAAASAKTPDADHDIARWSIAAGACFAMGLKFAGTAAADAHATLIHYLDRLSRASYVKT
SSIQGKMKRQALRASLAALSLALSMVMAGTGEINVLRRIRVAHGLFSDGITYGSHLAVHM
SLGLLFLGQGKQTLGNFDAAVAALFLSLYPIFPSTSIENRFHLQAYRHLWVLAVEPRYLE
ARDVDSGEPVFLPVRLRLKPDGVSGQPSGKAAVKQLVAPTLIPSISQIDAIQIDSPRYWA
FALNLSSNPSHLEQFLRDSTLYVKRKTGHLSYAQDPRGIRSIFTRSKSETGSSVFDFGQT
ARMLSTSANGLRDFVAAFSGDEEAVAATAALCLPKDASRPPTEFEAFSASVLLECLTKDK
RDVAPIYRAVYSAIKDLEAALNSPSSNSSSTALLETDDLRFVIEFYKLGAFKSIFSRVGA
PGPSSSSSKSKSGSSTSREPLLHPSFISHLSSTLSALGSGAVSGGGSNVFERYLRELGEW
PTDSHLSTRLSLALSHLRLPSLPTLSQLRDLVRQAQQNQGASKEVVEVLLRATAKKVEET
RGRGTAWTEEGERRMVESWCGGA