Protein Info for mRNA_2163 in Rhodosporidium toruloides IFO0880

Name: 10531
Annotation: K18468 VPS35 vacuolar protein sorting-associated protein 35

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1001 transmembrane" amino acids 109 to 121 (13 residues), see Phobius details PF03635: Vps35" amino acids 15 to 897 (883 residues), 1014 bits, see alignment E=0

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1001 amino acids)

>mRNA_2163 K18468 VPS35 vacuolar protein sorting-associated protein 35 (Rhodosporidium toruloides IFO0880)
MAPASIHSVEGGGNLPEALATVHTQTTQLRRCLDGDQIMDALKAASTMLAELRTSSLSPK
QYYELYMAVFDALRHLSSYLFDAHTSGKHHLADLYELVQYAGNIVPRLYLMITVGTVYMS
IPGAPVKEIMKDMMEMTRGVQHPTRGLFLRHYLSGMTRDHLPIGDDPGPGGNLFDSIGFV
LTNFIEMNKLWVRLQHSGLSRDRERRELERRELRILVGTNLVRLSQLEGVDLEMYRRIIL
PSVLEQVVNCKDVIAQEYLMEVVIQVFTPDFHLLTLSPFLSATAQLHPKVNIKSIVIALI
DRLAAYAAKEAENEPPEERRRQEEEAKRKLADEVRKQREKRRAAMEKADMLPSQTAAVKK
DEETEGWGAAVNVLPPGHPDAVKDLEVGDGKIDGQEVRSVGQNGQVRKFRGIPEDVKLFE
VFWEQVVNLIKARPDLSIQDITALLVSLANLSVSCYPAQLTYIDQVLSFAAYQCTAHADS
PDLHHATTAAHLLALLLAPIQNYVNVLTLLALPSYEKLLYAQPYATRRSVAHAVVASVLK
NETVIDSPEDVKGVLELCHVLVRDQKDRPSGPGAAGRPGMADRANSGGLDGGRGGLFGSG
GYGGGGYRNGGQQGGYDKEEMAEEQGWVARMVHLFRADDLAVQFQLLRTARREFTEGGDR
IRWTFPPLIVAAIKLARRYKQRQSTRRSLPPDEWDARISALFRFIHQCTSILYNKVEASD
ICLRLYLLALAAADESGHEELAYEFAVQAFTIYEESISESRAQLQAITAIIGALQVTRVF
GDDNYDTLITKAALHGAKLLKKGQQATAVALASHMWWQMDLPGREPSENDKPPYRDGKRV
LECLQKALRIATSSIDELTSVQLYCDALDQYLYYFERGVEAISAKHINSLVELISSNLDS
LPPLPPAPSPNPAHPSHAPHTTYAPSTLGGATSGLIEGVNTPEAVTRHFRNTLLYINGRK
DGANEQTTEEVMRLYQDVDVTGVLLKYGAGPNDQQQQPLRR