Protein Info for mRNA_2164 in Rhodosporidium toruloides IFO0880

Name: 10532
Annotation: K10736 MCM10 minichromosome maintenance protein 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 852 PF09329: zf-primase" amino acids 528 to 572 (45 residues), 54.7 bits, see alignment 3.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (852 amino acids)

>mRNA_2164 K10736 MCM10 minichromosome maintenance protein 10 (Rhodosporidium toruloides IFO0880)
MSDSDDDAAIARLEEQLAIKKERKRAREDEQRRREALMPKQLVPDSPSPRKKKRSSTDPS
LSTSASTSRFPPPPRFFEKPALERTFNPSDRVEMRTSNGGTKESKFVDHMSAVPKGFAES
MSASISAARSKQDKKRQVEERRRQSSSSLASSASTSLVKLDQLGQETKEVLMGGKKGDGA
RLRPRKEKEGGKEGKSAREKENALLAIASASASTCSSSAKPTTSAPAISRATPSALPKPA
SSSSSTSKPKQPSPDEDDLEITDGPSRRTRNKDGTVVNEVEIGPWEFPVRSEDPEWEKVE
PYSGIRLKERLIPHSEIQDLLTGRYPLSPSSLYALSRIDSRNRIDLDPEIVDADYVVFGV
LAWKDEVRFLNGGVGRDGGGREGKKDAEGEGEGESDEEEVATDGKGKQKAASTSSSQDPL
FRPPTRRSRRLRYIRFDLIDLSTPRASASATGQLSLMLVQADSVDKAVDEEGNETEVYKG
QSGGAYERYWKESPGAVVAIVNPIFLPHNKAYSYTIKPTSADSVHVIGRAENLTFCEAIK
KDGRQCGKWVDARTGKFCQFHVELAIKRTGVRRSETNANTASLAQKGTFNHSHFKKSLGS
SSSNPPSHDSAPAAQPLAKFVAGSTTYITTGTRSSTLTVPRGGLLSSSTSSRAGGFIPNL
REGPSVLEEKKRLKKVVEDEKRAREEMRTLRRLDKGRTAGGEYLIRSSRVKAEGAKEGKG
EKKRRRTPDEDDAGSSDEEEEDVKPNLSSVFKADALRKIGFNPTAKPGDLPRDESSETKR
YRLALESGLADREIKLSAPKPPPKSKVKTRVEKAAEASATNTEDDEDEDDDLVIEGGPGG
EKPKISLAKASS