Protein Info for mRNA_2167 in Rhodosporidium toruloides IFO0880

Name: 10535
Annotation: K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF03850: Tfb4" amino acids 9 to 293 (285 residues), 305.6 bits, see alignment E=1.8e-95

Best Hits

Predicted SEED Role

"Transcription initiation factor IIH p34 subunit" in subsystem RNA polymerase II initiation factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (347 amino acids)

>mRNA_2167 K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3 (Rhodosporidium toruloides IFO0880)
MALQDSVGDLLCLIVDLNPVSWARSAQPSAETNDALSLEQALDQTLVFCNAHLALRHENE
LAVFAAGPGRSRQLFSSQLTPTTSSSSTPSTSTPANDSNTYQQFRIVDEHLKAGVKEMMA
HVPDEPDGGSNLVGALSMALCHINRLSTTDPLSASSAASAIRRPKPRIVVISVTQDSSAQ
YVPIMNCIFTAQKNNIQIDVCKVFGPDAVFLQQACHLTSGSYYKLARRAGLLQYLMMAFL
PGPAAHRHLNQPRQEQVDLRAACFCHRKIVDIGYVCSVCLSIFCSPLPVCSTCRTKFPMS
TLKRLGFGARPPGAAGGAGLPRPKKRKVASATPGGASPAASPAPAAA