Protein Info for mRNA_2170 in Rhodosporidium toruloides IFO0880

Name: 10538
Annotation: K20294 COG7 conserved oligomeric Golgi complex subunit 7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 952 PF10191: COG7" amino acids 33 to 392 (360 residues), 124 bits, see alignment E=3.3e-40 amino acids 441 to 787 (347 residues), 64.6 bits, see alignment E=3.1e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (952 amino acids)

>mRNA_2170 K20294 COG7 conserved oligomeric Golgi complex subunit 7 (Rhodosporidium toruloides IFO0880)
MPAGLTPPRSLSPSALSPASNTSPSPTISDDLDLAALTSDAFTSEADWLNAVVEKSLARR
KSNDQSLAEVESTLTPTLHSLDILVGDTSAAVDRLINEISLSIPRLTFDLQLMRENALLL
RFTLDGIRKRGGGYGTESEVGKVLERMRVLDLVKQRMEAARDVLREAESWSTLESEVTGL
IGEDQYAKAAERLAEAARSMVVFQNTAEYEGRRALMVSLQNQLEASLSSGLVKAINERDV
KGCKQLWNIFGMIQREQEYRTYYFSNRRGTLVDSWTSAKLSDCLEAPSALPISATPNLNA
PTQKFVDALAHFYSDLQVLLAEERTYIPAIFPDPAPTLSSFIETTLEGLSPPIPQRLTSI
ADFYGPLVLPEVIAAYKATEEFAVQVERTFAKLEPTPAPAPSPPAHLPTSPRPGHSPSSP
SFDHGGDEDEEASAAQVRPWETALFEPFLDWQVEYPELERRYVASEMSKSLGDMGDWTAG
LMSGSSSTGSEKGAKILLDKAGKVFSVLEEAIGRNLALTHGYGARGLVDVMNEQLVAFFD
RRKEDLMRAGREKGSASARRRAQATAAALAGGIASPDEEQEMVFEGLEYSTEDWSTFQFG
LKLLDTCRGMAERLTAFEAKLKARMTVLAHAVREARESPARYTVPGTTKGAILLLRQSTL
NSAELAELLDPLEKPHEAPSGGSLAHPPPPPPLSPFLLPKARGAATDFTRTTQLFLHDTI
LAPLFAHLNEYSTLSCWTTTQDQRPGGKGAFDLAIPTFSLSPTETISRVGEGLFNLPRLF
EVYADDDALAFSIETLPFVDVETLRALQQPPQAAPPMLRQGSGHRSTSSEALSGGIPASP
ALTPPIPLSAETVIATWLSSLTLSILSHLTSTVLPDIPRLSKHGSAQLVSDLEYLANVAR
ALDVESPEELDSWRDAAALDDKALRGEADVDERIDRTVLERVARIRGIRRAA