Protein Info for mRNA_2171 in Rhodosporidium toruloides IFO0880

Name: 10539
Annotation: K06877 K06877 DEAD/DEAH box helicase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1390 transmembrane" amino acids 1046 to 1060 (15 residues), see Phobius details PF08839: CDT1" amino acids 187 to 261 (75 residues), 38.5 bits, see alignment 3.9e-13 PF04851: ResIII" amino acids 495 to 642 (148 residues), 24.4 bits, see alignment E=6.6e-09 PF00270: DEAD" amino acids 499 to 681 (183 residues), 85.8 bits, see alignment E=8e-28 PF00271: Helicase_C" amino acids 739 to 845 (107 residues), 43.5 bits, see alignment 9.3e-15 PF09369: DUF1998" amino acids 1113 to 1200 (88 residues), 76 bits, see alignment 8.3e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1390 amino acids)

>mRNA_2171 K06877 K06877 DEAD/DEAH box helicase domain-containing protein (Rhodosporidium toruloides IFO0880)
MAPPAGPSHIFGKGSKRARLTGGGLISSHAPTTSPPPHALSTDSHTDRSAQEPLFRPEED
FEDLDAEDEGDFEPVASTSAAPSTPATRELSAFASPAPSTSRFSQLPPPPKKKRKTKAGD
DEAEQGAEGAVEPVEAEREESVRGKGKGRGRGRGRGGTTAGRGRGKGKAKTDRETIEKLV
VPTVDFPEHFVKLEKTFKALNTVYTFCSTRKSMATTFEVLKGSVENLIKRSLEMRDIAQI
KSLLPEVVTFAYIDSDQLRVHASGTPEDAQAAKREQKQRELDEAYRAGGAGEEAAEGRRA
GGGETVLLFSFNDGELRSENGVGKVITKKFQRKKKKGEAPSPLPPPETQPKFSTKSMTDL
INKRNLKFRAAVSDLLIACSSHNPPLDPVGLLLEATEENLPVHPDELLTEEDIRERGVKE
RKEELEFRERNPDLRPSMRQIIEEMMGDKELYRDQIVEDGHRTTEARQAVYGQLDHAISP
AFAEALLATKNINHHQLYSHQAAAINALHPSDAHPRGHHVIVSTSTSSGKSLIYQIPVVQ
ELEKDPDATALYVFPTKALAQDQKRSLGELVAGVEGLNDVKIATFDGDTPKEDRDYIREN
ANVIFTNPDMLHITILPQEERWRRFFRKLRFVVVDELHIYSGLFGCHVAFVMRRLRRICA
ALGNRHVRFVSCSATIANPVEHMRTIFGVDDIVLVDDDGSPSGRKEHLVWNPPYIDDLDP
KQGRVSTIAETSRVFRFLMERGIRVIVFCRVRMQCEILMRQVRQDLMLDGRSDMASRVMS
YRSGYSAQDRRKIEQEMFSGQLLGVIATTALELGIDIGSLDAVITVGFPYTLPGLRQQAG
RAGRRNKDSLAMLICDPFPLDQHYARNPDLIFSSPFQKMALDLDNPLVLEAHIQCAADEI
PLHPVEDAVYFTGGDEDKLRRICLSRLVGDDDGFYHCHPRYKPYPARTVPIRNTEDEHYT
IVDITGGKSEVVEEVETSRAIFTTYEGAVFMHMGRTFLVREVNHDRKLAKIEEASLEWRT
RQRDYTNIDPVEALSIREVQGGATTASYGVVSITAVVFGYFKVDRRNNILDTVDVHSPPF
VRSSHGLWIEVPRTALEILLLKNFHPAGSIHAAEHALLSLTPVFAMCAEGDVRTECKNPE
KEMSSVKTTRKRPARLILYDTAGKSGGICAKVFDHINTLIAQAADTIANCRCSQGCPSCV
ASNLCSGANTIVSKLGALIVLDAILGRPIDIDSIPMQELAKGVTPGGPGATIDLAGAGVR
PEVIKAAQAMAAMGPGAGAGIKLEELEEVDEVDEAELLERERALAELMGPTPTSQPPQSA
PAQLDDYYEPDEEELLERERALQELMGRAAGAGFDNSRGEAPTEERETEKDQRERGTFRL
SETGGFLRGV