Protein Info for mRNA_2179 in Rhodosporidium toruloides IFO0880

Name: 10547
Annotation: K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1582 PF00618: RasGEF_N" amino acids 564 to 674 (111 residues), 58.7 bits, see alignment 6.3e-20 PF00617: RasGEF" amino acids 1271 to 1530 (260 residues), 137.5 bits, see alignment E=6.1e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1582 amino acids)

>mRNA_2179 K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures (Rhodosporidium toruloides IFO0880)
MSAQATRRRPGSLVQTSQDPTFDTRDLPDGSGMWASVGEGFAETTNGAAARALARFYAER
ARDGGENEGAVQTRVDESGRTVYRVKPIADSPISPSSSSSAASSHIPFARPSHQPTPATT
RPKVALYRSSLRQSRSIPVLRSTPLDPETSASPALLSPTAAAFQTAQATSAANSSRLRRI
GSSPTLNSTPALAQQSSHDNRNSSRSSSYEGDVLGRILGWREDVTLQQHAGLKTGTATKS
RREGTARVGLPDLFRRKGSSAASSSGGKRGRKGSALSTADTDTTDLPDDLVEELDSAFDG
TRLDHPFASPPKRPSFARGPFGTGVRIPRAVSQVPLSGASWTTQGEASLPRPPHPMREVA
SNDSIRTARADDAQPLSQPHAPRLRYQDPTIFDVFHRPAGLSSPPLPPAELPHNIPFGQH
GRLPSSASLASARSSGSHASGQQITVVPAAGDDPRFVIWGLKNGAKQPIIPTSPPAMGSR
RGSAAPPVTPGKSGRRDSMAEGARDQFGSPASSVTGSPAPSARRWSVSQRGSGPISSPAT
SIRDSVGSAKNTPLPSTPSAQRILMAASVERLVAELTSQISSDLLTDFFLTYRHFIAPVD
LLHLLISRFDWAMTPSTQPQSGLSFSTSSSSLAALAAEDDALRRVVRVRTFVVIRYWLLN
HFMDDFFPSRELRTTLTVGLNNAARDERFRSSPKDARLIKGLKKTARKCKEAYILGATSA
ATATSGTSPALGAPEDELDLDLASIPVNGTSPARPYDLSGRSKTRLFATSSPSSPPRQHG
SVDAPFPLPDSTSQNPIARSFSSALGSIGRIKRKLGAATKGQTAQDHSGSRKAFEVSGSE
EGDLLRIEGGLEKYLEFWNIKRDSDAGVEDQEVTPPLTSNASTFETDEIASPEPDVVHDP
EQPPSEVAIDQSFGLGLGIAGVDDPMPIASTDYAFPPKPATVPISAEPSYSADSTATIPA
PLPSAAPDFILRPGAFGHVASFDRRESVRIELDDLDDSDEDEDVIEAKRTLKRLPAAQDL
RFVAERSLDHAQLPPRRSIDSETSDLLRRSTRGPAAFDWARDDQPRESVLFVDDEEGIEP
GVATVPNFILEGLVDSDDEEPGDVEAALRRLEGLVDDTKEQEKARRVAMQMEKSSKLEEE
RRRLAEAGEGETGVEIDVDVAARLVAPATDDVVASAARLPDTIDMTPPSSTEPAESRRVE
TIASPPVDQAPPSAPSTKLTSQLAAPEPPAFRKPSVSRIFRPFSARPALRPTIPAAPAHR
SFILFCKTETLAQQFALIERDMLRMLSYTELASGSWQERIGETDVHDWEAYVKERRRADL
IAKEKGVQPSSAVQDVIARFNLTANWVCSEILLTASIDERAILLAKFIRLAFKCYCMSNF
QTLTQIVHGLQIPDVERLRKTWAKVPSWEMRKFRGMQVFVSHLKNFKYLRAVTNALIATE
AGLPNTRSGSFDSTAAAAAKGCIPFLGIFLRDLALNAELPTFLDPTNPDIPAEVDAAGSL
VSLADPSAFDELPPLPPSISLAPLVNVHKFRILAGTVRKVVAFQDLANRYTFEPTPSVYF
KCLKIRSLEQDVMHELSRKLEA