Protein Info for mRNA_2189 in Rhodosporidium toruloides IFO0880

Name: 10557
Annotation: K11236 CDC24 cell division control protein 24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1099 PF06395: CDC24" amino acids 178 to 267 (90 residues), 79.3 bits, see alignment E=4.3e-26 PF00621: RhoGEF" amino acids 299 to 467 (169 residues), 119.3 bits, see alignment E=4.9e-38 PF15411: PH_10" amino acids 496 to 613 (118 residues), 128.1 bits, see alignment E=4.8e-41 PF00564: PB1" amino acids 1000 to 1084 (85 residues), 48.9 bits, see alignment 1.1e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1099 amino acids)

>mRNA_2189 K11236 CDC24 cell division control protein 24 (Rhodosporidium toruloides IFO0880)
MSVIQKQPHQPDQPAFSSSSSSRTGTTAAANGFDPSSVSRSASRNGQPQPHPSPLLSAPL
PPTPGAGGSGSGSSSPGLGVGGVRPAMDRMPSTLGDTPVATNSALNKAASASSSIYQRCS
TVRDRLYRVPDFEDRFLRTDTDSSLLSASSSSTPTPTLSPALGASTSASPPDLTTQTDPV
SQVLSVLRLGSSLCFLFNQLGHPHQLDVNPQATLSNLKACQRGAAHFIMACKQDLKWPEE
DLFAVNELYGQDTNGVVKVVHTVTKLLDLLESQGVLLPPPADTSPAQPQPGPSDERSLVV
REILDSERKYMQDLEVLQDYQRQLQMNDILTQDQIHSLFINLNKLADFQRRFLIGVETNA
SLPPEQQRFGNLFLQMEDNFACYEPYCANLTNAQDLAIAENAALSKLAHVLDPVSELAPL
LIKPVQRICKYPLLISQLLKNTPDTFPFYDELKAGLESIMRVTDKVNEEKRRKDNGQAVD
DLARRVEDWKGHDINSFGDLLLQETFVVIKSDNEREYQVYLFERIILCCKEVTAQGKKDK
KSNSLLKRPPSQRINKLQLKGRIFVNNITGASQVHARSGQYLLEVRWRGDVTEEAFTIKC
RTEELLKQWQKAINKAVEEAPTRRRAHHLSSSRRSERSVHSPASQFPPTPMSEYGPLGSA
ASSVYSYHTTESSFASPASGAYPHGHPYGSLHAAHSPYPPSHSGPGTPHLGFDDDHHDDG
HSAGFYEPSESGRSTPSMRRGPVTRSLPAEQRQDGYAAGAPHRPRAQTEDSSSNVINPWR
NQTPGQPGTPNLPSQPLRGMSSTNSVGGNGAAGADAQSLRSSASSRQLRNKQSTEWGGPG
SITSSPALSSYSRLPTQEEEVTPRMGPGAPVLRQASHQYPAQNVVAPPMLRNRSASSPNI
YQTQGGRFPDSPQMPDGIDHAYHAGAAKAGQRGVGTHSGGTISSMSASSQQQRSSTASSN
ATDRSSATSAHSSSALPYAATNGRGGLVSPPAAAGAASAVRVKVYFGEDAFVVVVLDNVS
YPDLVEKVLKKIRMCGGDKARVEGSAVRLRYRDEDGDRILITSEEDVSMAFETARVIHAD
KAASGAPLELVLYASVDGQ