Protein Info for mRNA_2193 in Rhodosporidium toruloides IFO0880

Name: 10561
Annotation: HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 784 PF12697: Abhydrolase_6" amino acids 303 to 433 (131 residues), 27.9 bits, see alignment E=3.5e-10 PF02450: LCAT" amino acids 310 to 397 (88 residues), 22.4 bits, see alignment E=6.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (784 amino acids)

>mRNA_2193 HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MAVPLPGAPNQLSDADTTPSSSASSTSSSLLSKVRRRISARGKGTNWTQGKRSLEAIRGH
LPKSLRSGNGSEAGEEGSTIGEELLAYTIAPPDHRENTALHAIMDSLPSLGSLHAPSISL
PSIRSTPHVASCFTAEGYDSDEDSSSPPPTPPAADLDPSSAAPPCRGYAPPINPATTAPP
FPRRSSDPKPSTSTTTSSSDPLDHLSGNVLMLGGYRGSVLRDAKTRKRLWIPLKVGFGIR
KADLGLGLEEVDEERAGERVVASSMLTQVGGMIDLGKKLKERLKQVSSYQRHHPPPDPLL
HPPVHFQTFGYDWRLSLQRSSAALLAHLEQLKAESAARGEGPDGKGLGATVVAHSMGGLV
LLHAIARAKDPSVVRGVVFAGTPWQGCVNTLGPFKLGGGIALNTKVGAPEIVFSWRSGFY
FLPPPISLSNPQPGGNHDDYPDSCTGEAVSDEPDSISLPNDSLVPAVGSAPRSTSSSRSA
SPTRPAPPKRATSIPLLSLLHNSFESPSGRPLSLNLFSPQTWATHALSPVSAGMDFAHPS
RPVKKVVSRGGGGGGGGLLAGGPGNLGESEAGATEAVEAAEGVQSALEGVAERLGGEEEG
EGESSREGSEVGVPTAGVGAGPMEPTGEENEMAQREEMERLEKQAKEVETVGSYLERTLQ
RAREFQEDLVNLYDPAKAHLYPPIAILTSRKTPTVRAVCATSEKHVAVEGYQRLLWAEGD
GIVLYESATRLPGDPELAGRPRTGKPETDRWMAHLKGVVETSNGHVGMLGDLEGVRKCVE
LIYG