Protein Info for mRNA_2194 in Rhodosporidium toruloides IFO0880

Name: 10562
Annotation: BLAST ER to Golgi transport-related protein, putative [Cryp...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1504 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

"Translation initiation factor 2" in subsystem NusA-TFII Cluster or Translation initiation factors eukaryotic and archaeal or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1504 amino acids)

>mRNA_2194 BLAST ER to Golgi transport-related protein, putative [Cryp... (Rhodosporidium toruloides IFO0880)
MLASLSSSVQGFLARSSSHARLDAAGTGKEGAGVAELGQEHEDSPHTPSPHRPAPATSST
TQHYSPTSLSASGNQTIQRVLDAHPHFSVFRKSASVGSLDELARKREEEDESPIGRRASL
GVRDLRDAEEEVETLATPPNQSPAPSPRLHQQPNRPSPARTASDSSGSSFHLDSAEMPSL
NFGDQSSSISLSPGPGSAGSSPAPSVVSGTPSGGVRLVPDSPPITRTPARSRSVSTASSA
SSQSSKKSSTTTSSSTSTLPPHVARIQFSPLSLCPSPLLHAPSLPPPPAPPTFESPTEAA
GIAGGEKGILKRPRTPGTGRSVRWREWDDEREISVERDGDTSNSLDHEQEREKEEEGMEG
EERASFLSKLKAVIPSPDSSLVSPPSPPPSPPKPQEPTLDSVQGPGGGQGPMLFDESNPF
IFASSSTSVSVSHVSQASTSASFAIAERTSATADEADLTSRPPVSSDPATEAADDSLSLA
HLSTGTEDDELLLMRASTANLVAPDFGGKSFLMVSQVGRLLPEAARKKEVGVLEEIGEEE
EVDEPEQVVEKSVVATPRAGTGKSTAPRVPSPLAQVTLVGDASTSSSSSVADQYTSPSQP
ASTSQNSQSSTSFYRLFMSTRASSGLSRSAGEEWARLERGEKESPKDRTLSSSERENEAE
EEEDGEEGERSEYWSIVKSRLEEREEEEEEEQEEEDVEGLLRGLGDSRFVEVAHEEGGIR
AVERAGNAEDTVVEHAEARGVFLSPIVEVTEPESDANTPFERGSGRRLRARSQDPPPPQP
TFSLSLAAKHLASSAPPATPGRSTASALPPKTPRSASKIPRPRNPITPSQNPFLLQLARS
GPDGAPPSRAATLLQDLFSTQQDQLATSASQRFILSSLVTNLQNEVEHKDAMVANLKRQV
QEARAEAKEIERLALEWEDRALHAREGESVKQDEKKIAALEETVSLLADELETRMRDDRA
LRQAFEADLERLRRELDARTAEVREGEIRLRYARIAQDEAEEARDALRDQVEREKSRRAE
VERERNEVKARWAFDVEERDNACARLREEIEHLKATSPSARGAVFDEAQVAEEVERRVAS
IRQEADRNVHLARQELAQRDASVADLRDELRSHRDEVDRLTRAVQEERQHAELANADLEA
LLQRKEQELEEALGSQALAHEELEATYARLDAAEVERDNAVNAVNAANAKEVELAQQIKQ
CEAALAAMADLDQAVARIEAEASAKDEQLASLRADFEAQRLESADVLAKRDAVLAEAECE
ASILKKDLEALQKENNRLSDLVAKLRRDSADREVKVAKLKKRAAELEEDVFGLNVALDAK
QQEASHWKRQMSSLKLERERATSVSQVVNGSAIASTSVSRSVLAPTVPASSRTSKTSARR
SSVSKRQHATTPFPADKHQAAATTARRVSISVPASRATTDTDDEEFSHDLTLPPLHAGNE
ETPIRPIQPGVRRTSSATSLSSGMSYPGRIAKERERLRSRKESEDAKENTAPAPARRIRE
AVLA