Protein Info for mRNA_2195 in Rhodosporidium toruloides IFO0880

Name: 10563
Annotation: HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 990 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 586 to 605 (20 residues), see Phobius details PF00082: Peptidase_S8" amino acids 218 to 630 (413 residues), 139.5 bits, see alignment E=1.4e-44 PF06280: fn3_5" amino acids 669 to 791 (123 residues), 44.4 bits, see alignment E=2.6e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (990 amino acids)

>mRNA_2195 HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743 (Rhodosporidium toruloides IFO0880)
MLMATIRVWLAFAVFAQVASASFASIKAAQAERNVPVTYARQEIVPGSFLIEVGGGSLSK
RDGAAHLSRILSHLASPRSTVDNGTSLPTFSATRQLTARPSLFHGAVIEVDDLNVLEKLA
AGGESTVKEILQGLHGVEGVERAWPLRVLRGAAPLRMSTQRRAETTESPTFDAALSASLA
KRGATNFPPPSAYANDTFSPHVMTGVANLHNQGILGSSDVKVAVIDSGVDYLNPILGGCF
GPGCLISFGGDYMIDSPGPTPYTDCSDHGTHVTGTVAALANSYGFSGVAPGVQVGHYRVL
DCDKSAPEDRIVNALLAAANDGVNVINLSTGSRIGWLDVDPTQLVVERLTTQQNITITVS
AGNGGAAGPFLAFSPASSIGAISVGAVNVEQLPAFPAQVDPFGVLPYLSSTPLNTTNLPT
SDNGYPVYFTSTTSAVTGDACDSLPSSTPDLSASIAIVRRGGCPLETKMSNLAAKGAKVA
LIYNTPDALNLTTDLEAGTTGLAVVASLRYEEGTQLLQWYNLRSGNIRISFPQGMAPIFI
EDNVSSGLVWSLSNWGPTFELFGQPSLAGPGSNILSTVRLNEGGFGVFSGTSMSAPFLAG
CAGLLLSQRKSDGLSPADVRALLTTTASKRSTTHDKATIETVLRQGGGLVQVDKAISTRT
IVSPFELMLNDTAFSASTQMIMLRNTNAFPMQYNVSSSSAQAYAAYENNASTDPFISLKP
QSISPQAEQISFSTQHITVEPGQTSAFTVTILPPTFSAAELARFPLYSGYIDISGHSNDP
SHAEELHIPYFGLAAAMRDMPVLDSTAKVYGEVAYPFITSDNFTIFDAPGALSVSQEFTV
LLRLAAGTRFFSVDVILSSDAPPTTIPTQRRGIPSPNGSRRRDTPTATEAGSTSLHANIA
RATSTPLFDATPIVGTIARIALPSHRDYFADRAPNDFTERQFPFIPNRAAFQMQQSVQYC
VLVRALKITADPTLASSYESWVSYPFTLSS