Protein Info for mRNA_2197 in Rhodosporidium toruloides IFO0880

Name: 10565
Annotation: K20042 FCHO F-BAR domain only protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 PF10291: muHD" amino acids 713 to 973 (261 residues), 146.4 bits, see alignment E=5.7e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (974 amino acids)

>mRNA_2197 K20042 FCHO F-BAR domain only protein (Rhodosporidium toruloides IFO0880)
MSANPSLYADSFSQSRSPSSTFHAVDQRLSLSRALTSDLASYFHERILLEDAYIKSLNKL
SQRLKGAGKETVFREIEALGVGDSALEKQLGAGWSGVKKQLEGEVVEQARVHEVWRNKLE
KEVAGPLKSSLGKTEWTRWNQAEGQLASSVKEYESLVDKVQKAQAKSTKSGKSASSKQLQ
SQSALSSLGSSLTSSLPSFLTQSQALDLSHQAFLKECLVRCGTIASDLGRERMEMGERLL
VRVLGVDESAEAEEWASREGMKLGGGGAGGPSRNGLAPVGEFGETASVNSGAGGGFASAT
GGSLLDRDDAASTVSGATGVERSRTMSRPGNAPPPAAPLPLPTTDDSRSTKESKSGLGGK
LSSFLGGSKARDRSSSIPNSAKYASFSTPNDAPPVPRPEMGERRETDASGSSDLLGGGPS
GGGMPPPLEPQRTGNGQQQEKRKSLMPGSSLFRRPSRAGTQLSDFDERAGNSSAPQYASA
MSAEPVETPGTARVDEEGYSMPPEGYDRAIGEPRSGTGRSLLDDDDEPLGESYGTSIPKV
SIAPSLPSSPVVAQESEAERLAALESVKNALGAPPATAAGAGLGRRATARGRRGEGGARN
TIYGGSGGLATPPQAERQDSTISEDDVPLATVVQQKHRREAPPPPVSRAVHTPSESAMTL
SPSLPTSPASPGFIPPSPAPVAGRAMSVMSGTSSLGPAAAHGRPDPFAGVTSPGLRASIV
ETVNVLLKNGEVTRVLVTGEVGLSYRPSSSSPGGQLKLRLTGLDGLEKTAPNPSLLSAAG
AGEFTVSPSLAAHNGTTVTAFKYQVSLLPTSSSALVPLIVKPTWRCEPGLARAIVTYSAN
TSSTIFSASPSSSPFGEDDDSATSGRLEDVKLDLVLASGTATSFQAKPPSGTLINSNRTL
SFSLGSVDAANGGEQKILASIQTEGAAAAQPGPVSVSWVVRGRTVGNVGVEVVEGGEAIE
EVRRETVSGKYLAA